Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | E3I93_RS01615 | Genome accession | NZ_CP038021 |
| Coordinates | 354926..355429 (+) | Length | 167 a.a. |
| NCBI ID | WP_000934799.1 | Uniprot ID | A0A7U7IE99 |
| Organism | Staphylococcus aureus strain 04-002 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 355955..375031 | 354926..355429 | flank | 526 |
Gene organization within MGE regions
Location: 354926..375031
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3I93_RS01615 (E3I93_01615) | ssbA | 354926..355429 (+) | 504 | WP_000934799.1 | single-stranded DNA-binding protein | Machinery gene |
| E3I93_RS01620 (E3I93_01620) | rpsR | 355481..355723 (+) | 243 | WP_000897044.1 | 30S ribosomal protein S18 | - |
| E3I93_RS01625 (E3I93_01625) | - | 355955..356674 (-) | 720 | WP_000400841.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| E3I93_RS01630 (E3I93_01630) | - | 356787..358001 (-) | 1215 | WP_134521422.1 | site-specific integrase | - |
| E3I93_RS01635 (E3I93_01635) | - | 358276..358995 (-) | 720 | WP_115300110.1 | helix-turn-helix transcriptional regulator | - |
| E3I93_RS01640 (E3I93_01640) | - | 359181..359393 (+) | 213 | WP_044292240.1 | helix-turn-helix transcriptional regulator | - |
| E3I93_RS01645 (E3I93_01645) | - | 359394..359666 (+) | 273 | WP_115300111.1 | helix-turn-helix domain-containing protein | - |
| E3I93_RS01650 (E3I93_01650) | - | 359678..359824 (+) | 147 | WP_000784893.1 | hypothetical protein | - |
| E3I93_RS01655 (E3I93_01655) | - | 359817..360029 (+) | 213 | WP_001058496.1 | hypothetical protein | - |
| E3I93_RS01660 (E3I93_01660) | - | 360031..360390 (+) | 360 | WP_001038252.1 | hypothetical protein | - |
| E3I93_RS01665 (E3I93_01665) | - | 360391..360711 (+) | 321 | WP_115300112.1 | DUF1474 family protein | - |
| E3I93_RS01670 (E3I93_01670) | - | 360775..361644 (+) | 870 | WP_115300113.1 | primase alpha helix C-terminal domain-containing protein | - |
| E3I93_RS01675 (E3I93_01675) | - | 361656..363026 (+) | 1371 | WP_115300114.1 | DNA primase family protein | - |
| E3I93_RS01680 (E3I93_01680) | - | 363302..363625 (+) | 324 | WP_236650833.1 | pathogenicity island protein | - |
| E3I93_RS01685 (E3I93_01685) | - | 363627..363890 (+) | 264 | WP_001003076.1 | hypothetical protein | - |
| E3I93_RS01690 (E3I93_01690) | - | 363892..364533 (+) | 642 | WP_134521425.1 | pathogenicity island protein | - |
| E3I93_RS01695 (E3I93_01695) | - | 365069..365410 (+) | 342 | WP_001190614.1 | hypothetical protein | - |
| E3I93_RS01700 (E3I93_01700) | - | 365441..366094 (+) | 654 | WP_000214170.1 | hypothetical protein | - |
| E3I93_RS01705 (E3I93_01705) | - | 366147..366674 (+) | 528 | WP_116843092.1 | spore coat protein | - |
| E3I93_RS01710 (E3I93_01710) | - | 366806..367018 (+) | 213 | WP_001656917.1 | hypothetical protein | - |
| E3I93_RS01715 (E3I93_01715) | - | 367015..367584 (+) | 570 | WP_001293071.1 | terminase small subunit | - |
| E3I93_RS14940 (E3I93_01720) | - | 367631..367714 (+) | 84 | Protein_327 | terminase small subunit | - |
| E3I93_RS01725 (E3I93_01725) | - | 367861..368829 (+) | 969 | WP_000801980.1 | Abi family protein | - |
| E3I93_RS01730 (E3I93_01730) | - | 368971..369408 (+) | 438 | WP_073392942.1 | DUF3102 domain-containing protein | - |
| E3I93_RS01735 (E3I93_01735) | - | 369526..370038 (+) | 513 | WP_000813311.1 | hypothetical protein | - |
| E3I93_RS14945 (E3I93_01740) | - | 370054..370233 (+) | 180 | WP_000797954.1 | hypothetical protein | - |
| E3I93_RS01745 (E3I93_01745) | - | 370997..372004 (-) | 1008 | WP_001080636.1 | Abi family protein | - |
| E3I93_RS01750 (E3I93_01750) | - | 372010..372668 (-) | 659 | Protein_333 | site-specific integrase | - |
| E3I93_RS01755 (E3I93_01755) | - | 372961..373329 (+) | 369 | WP_000849155.1 | YxeA family protein | - |
| E3I93_RS01760 (E3I93_01760) | - | 373510..374082 (+) | 573 | WP_000769723.1 | PepSY domain-containing protein | - |
| E3I93_RS01765 (E3I93_01765) | - | 374220..374483 (-) | 264 | WP_001055897.1 | helix-turn-helix transcriptional regulator | - |
| E3I93_RS01770 (E3I93_01770) | - | 374777..375031 (+) | 255 | WP_000466746.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
Sequence
Protein
Download Length: 167 a.a. Molecular weight: 18539.12 Da Isoelectric Point: 4.7305
>NTDB_id=351440 E3I93_RS01615 WP_000934799.1 354926..355429(+) (ssbA) [Staphylococcus aureus strain 04-002]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF
Nucleotide
Download Length: 504 bp
>NTDB_id=351440 E3I93_RS01615 WP_000934799.1 354926..355429(+) (ssbA) [Staphylococcus aureus strain 04-002]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCACAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.341 |
100 |
0.689 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.971 |
100 |
0.563 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
63.473 |
0.371 |
| ssb | Glaesserella parasuis strain SC1401 |
34.463 |
100 |
0.365 |