Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   RA0C_RS00360 Genome accession   NC_017045
Coordinates   55504..56781 (+) Length   425 a.a.
NCBI ID   WP_004917728.1    Uniprot ID   -
Organism   Riemerella anatipestifer ATCC 11845 = DSM 15868     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 50504..61781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RA0C_RS00335 (RA0C_0066) - 51845..53029 (-) 1185 WP_013447219.1 sigma-54-dependent transcriptional regulator -
  RA0C_RS00340 (RA0C_0067) - 53066..53722 (-) 657 WP_004917720.1 YggS family pyridoxal phosphate-dependent enzyme -
  RA0C_RS00345 (RA0C_0068) mscL 53799..54170 (-) 372 WP_004917723.1 large conductance mechanosensitive channel protein MscL -
  RA0C_RS00350 (RA0C_0069) lgt 54311..55162 (-) 852 WP_004917725.1 prolipoprotein diacylglyceryl transferase -
  RA0C_RS00355 yidD 55170..55424 (-) 255 WP_013447220.1 membrane protein insertion efficiency factor YidD -
  RA0C_RS00360 (RA0C_0070) rarA 55504..56781 (+) 1278 WP_004917728.1 replication-associated recombination protein A Machinery gene
  RA0C_RS00365 (RA0C_0071) - 56778..57389 (-) 612 WP_004917730.1 L-threonylcarbamoyladenylate synthase -
  RA0C_RS00370 (RA0C_0072) - 57373..58179 (-) 807 WP_004917734.1 lysophospholipid acyltransferase family protein -
  RA0C_RS00375 (RA0C_0073) - 58208..58828 (-) 621 WP_004917736.1 NUDIX hydrolase -
  RA0C_RS00380 (RA0C_0074) - 58832..59524 (-) 693 WP_013447221.1 potassium channel family protein -
  RA0C_RS00385 (RA0C_0075) - 59532..61280 (-) 1749 WP_004917741.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 47550.20 Da        Isoelectric Point: 6.9193

>NTDB_id=35101 RA0C_RS00360 WP_004917728.1 55504..56781(+) (rarA) [Riemerella anatipestifer ATCC 11845 = DSM 15868]
MNSNIPLAEKLRPKTLDEMLGQEHLTGKDGTIRKMLDTDRLNSLILWGPPGTGKTTLAEILSEQSGRKFFKLSAVSSGVK
EVREVIDDAKKQHLFSGKSPILFIDEIHRFNKSQQDSLLHAVEKGWVILIGATTENPSFEVVSALLSRSQVYILKPLSYE
KLEELATIAVARFNQDENTDFTIENNQGFIQYSGGDARKLINSVEWVLNQYKGSGQNQLSSETILKVLQETIPVYDKNGE
QHYDVISAFIKSIRGSDVNAALYWLGRMLVGGEDIKFIARRLLILAAEDIGLANPNALTMANSCFQSVNVIGYPESRIIL
SECVIYLAASPKSNSAYQAINEALALAKKTAHLPVPLHLRNAPTKLMKEMDYGKDYRYAHAYEGSFVSQEFFPEELSGVS
FYRSGDNATERKIKEQISKKWGDKY

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=35101 RA0C_RS00360 WP_004917728.1 55504..56781(+) (rarA) [Riemerella anatipestifer ATCC 11845 = DSM 15868]
TTGAATTCAAATATCCCTTTAGCAGAGAAATTACGCCCTAAAACCTTAGATGAAATGCTTGGGCAAGAACATCTTACAGG
TAAAGACGGAACGATAAGAAAAATGTTGGATACTGACCGACTTAATTCTCTGATTTTATGGGGACCTCCAGGAACGGGTA
AAACTACCTTAGCAGAAATTCTTTCGGAGCAATCGGGACGAAAATTTTTTAAACTTTCTGCGGTTTCTAGTGGGGTAAAA
GAGGTAAGAGAAGTGATAGATGATGCCAAAAAGCAACATTTGTTTTCTGGTAAATCTCCTATTTTGTTTATAGATGAAAT
TCATAGATTTAACAAATCACAACAGGATTCTTTGCTTCACGCTGTGGAAAAAGGCTGGGTGATTCTGATAGGAGCAACTA
CCGAAAATCCTAGTTTTGAGGTCGTTTCGGCATTATTGTCTCGTTCTCAAGTTTATATTTTGAAACCATTGAGTTACGAA
AAATTGGAAGAACTGGCTACTATTGCGGTCGCTCGTTTTAATCAAGATGAAAATACAGATTTTACTATTGAAAACAATCA
AGGGTTTATACAATATTCGGGAGGCGATGCTAGAAAGCTCATTAACTCAGTAGAGTGGGTGCTTAATCAGTATAAAGGCT
CTGGGCAAAACCAGTTATCTAGTGAGACTATTCTGAAAGTTTTACAAGAAACTATACCTGTTTATGATAAAAATGGAGAG
CAGCATTATGATGTAATTTCAGCTTTTATAAAATCCATTAGAGGGAGCGATGTTAATGCTGCTTTGTATTGGTTAGGGAG
AATGCTCGTGGGGGGCGAAGATATTAAGTTTATTGCAAGGCGACTTTTGATATTGGCGGCAGAAGATATAGGCTTGGCTA
ATCCTAACGCTCTTACAATGGCTAACAGTTGTTTTCAGTCGGTTAATGTTATAGGTTATCCAGAATCTCGTATTATCCTT
AGCGAATGTGTGATTTATTTAGCGGCCTCACCTAAGAGTAATTCAGCGTATCAAGCTATCAATGAGGCGTTGGCGTTGGC
GAAAAAAACAGCTCATTTGCCTGTGCCGTTGCACCTAAGAAATGCACCTACAAAACTGATGAAAGAAATGGACTATGGTA
AAGATTACCGCTACGCTCACGCCTACGAGGGAAGTTTTGTATCACAAGAATTTTTTCCTGAAGAATTATCTGGAGTTTCT
TTTTATCGTTCAGGAGATAATGCCACCGAAAGAAAAATAAAAGAACAAATTTCTAAAAAGTGGGGCGATAAATACTAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(187-254)

MgsA AAA+ ATPase C terminal (MgsA_C)

(255-419)

ATPase family associated with various cellular activities (AAA) (AAA)

(44-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.541

95.765

0.388