Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | NBC122_RS08525 | Genome accession | NZ_CP037954 |
| Coordinates | 1849370..1850023 (-) | Length | 217 a.a. |
| NCBI ID | WP_133439968.1 | Uniprot ID | A0A4P6ZFX1 |
| Organism | Chryseobacterium salivictor strain NBC 122 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1844370..1855023
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBC122_RS08505 (NBC122_01731) | - | 1846135..1846689 (-) | 555 | WP_133439964.1 | LemA family protein | - |
| NBC122_RS08510 (NBC122_01732) | der | 1846900..1848207 (+) | 1308 | WP_133439965.1 | ribosome biogenesis GTPase Der | - |
| NBC122_RS08515 (NBC122_01733) | - | 1848267..1848614 (+) | 348 | WP_133439966.1 | four helix bundle protein | - |
| NBC122_RS08520 (NBC122_01734) | upp | 1848666..1849316 (+) | 651 | WP_133439967.1 | uracil phosphoribosyltransferase | - |
| NBC122_RS08525 (NBC122_01735) | comF | 1849370..1850023 (-) | 654 | WP_133439968.1 | ComF family protein | Machinery gene |
| NBC122_RS08530 (NBC122_01736) | - | 1850269..1851738 (-) | 1470 | WP_133439969.1 | helix-turn-helix domain-containing protein | - |
| NBC122_RS08535 (NBC122_01737) | aceB | 1851915..1853492 (+) | 1578 | WP_133439970.1 | malate synthase A | - |
| NBC122_RS08540 (NBC122_01738) | aceA | 1853716..1855002 (+) | 1287 | WP_133439971.1 | isocitrate lyase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25354.59 Da Isoelectric Point: 9.4791
>NTDB_id=350967 NBC122_RS08525 WP_133439968.1 1849370..1850023(-) (comF) [Chryseobacterium salivictor strain NBC 122]
MFLVDLLFPNRCLECKRIIHPEEVVCELCFNQINFTHHHISESNLLTEKCRLLFPIENAFALMQFERQSTSQKIIHQLKY
GRREKIGKIIANWTAEKLDFSHSKPDLLVTVPLHPKKLKERGYNQLHLFADELSKNLKIPCEHTLIKRNFYKKAQAKKKK
EQRNFNENLFSITRNISNHHILVIDDVFTTGNTMSAVAWEILKAGDNKVSVLVMAMD
MFLVDLLFPNRCLECKRIIHPEEVVCELCFNQINFTHHHISESNLLTEKCRLLFPIENAFALMQFERQSTSQKIIHQLKY
GRREKIGKIIANWTAEKLDFSHSKPDLLVTVPLHPKKLKERGYNQLHLFADELSKNLKIPCEHTLIKRNFYKKAQAKKKK
EQRNFNENLFSITRNISNHHILVIDDVFTTGNTMSAVAWEILKAGDNKVSVLVMAMD
Nucleotide
Download Length: 654 bp
>NTDB_id=350967 NBC122_RS08525 WP_133439968.1 1849370..1850023(-) (comF) [Chryseobacterium salivictor strain NBC 122]
ATGTTTTTAGTGGACTTACTTTTCCCGAACCGCTGTCTGGAATGTAAGCGAATTATCCACCCGGAGGAAGTGGTTTGCGA
ACTGTGTTTTAATCAAATCAATTTTACCCATCACCATATTTCAGAAAGCAATCTTCTGACAGAAAAATGCCGTTTGCTTT
TCCCGATCGAGAACGCTTTTGCATTAATGCAGTTTGAGCGGCAAAGTACAAGTCAAAAAATCATCCATCAGTTAAAATAT
GGCCGCCGGGAGAAAATCGGAAAAATCATTGCCAACTGGACGGCTGAAAAATTAGATTTTTCGCATTCAAAACCCGATCT
TTTAGTGACTGTTCCCCTTCATCCAAAAAAATTAAAAGAACGCGGCTACAATCAACTGCATTTGTTTGCAGATGAACTTT
CAAAAAATCTTAAAATCCCTTGTGAACACACTTTAATTAAAAGAAATTTCTACAAGAAAGCTCAGGCAAAGAAGAAAAAA
GAGCAAAGAAATTTCAATGAAAACCTTTTTTCAATTACCAGAAACATTTCCAATCACCATATATTAGTGATCGACGATGT
TTTCACAACCGGGAATACGATGAGCGCCGTTGCGTGGGAAATTTTAAAAGCCGGAGATAATAAAGTGAGCGTTTTGGTAA
TGGCGATGGATTAA
ATGTTTTTAGTGGACTTACTTTTCCCGAACCGCTGTCTGGAATGTAAGCGAATTATCCACCCGGAGGAAGTGGTTTGCGA
ACTGTGTTTTAATCAAATCAATTTTACCCATCACCATATTTCAGAAAGCAATCTTCTGACAGAAAAATGCCGTTTGCTTT
TCCCGATCGAGAACGCTTTTGCATTAATGCAGTTTGAGCGGCAAAGTACAAGTCAAAAAATCATCCATCAGTTAAAATAT
GGCCGCCGGGAGAAAATCGGAAAAATCATTGCCAACTGGACGGCTGAAAAATTAGATTTTTCGCATTCAAAACCCGATCT
TTTAGTGACTGTTCCCCTTCATCCAAAAAAATTAAAAGAACGCGGCTACAATCAACTGCATTTGTTTGCAGATGAACTTT
CAAAAAATCTTAAAATCCCTTGTGAACACACTTTAATTAAAAGAAATTTCTACAAGAAAGCTCAGGCAAAGAAGAAAAAA
GAGCAAAGAAATTTCAATGAAAACCTTTTTTCAATTACCAGAAACATTTCCAATCACCATATATTAGTGATCGACGATGT
TTTCACAACCGGGAATACGATGAGCGCCGTTGCGTGGGAAATTTTAAAAGCCGGAGATAATAAAGTGAGCGTTTTGGTAA
TGGCGATGGATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
51.152 |
100 |
0.512 |