Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   MGAS15252_RS07475 Genome accession   NC_017040
Coordinates   1543764..1545032 (+) Length   422 a.a.
NCBI ID   WP_011285735.1    Uniprot ID   -
Organism   Streptococcus pyogenes MGAS15252     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1538764..1550032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MGAS15252_RS07450 (MGAS15252_1536) - 1538932..1539681 (-) 750 WP_014407873.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  MGAS15252_RS07455 (MGAS15252_1537) prmA 1539681..1540634 (-) 954 WP_014407874.1 50S ribosomal protein L11 methyltransferase -
  MGAS15252_RS07460 (MGAS15252_1538) - 1540705..1541175 (-) 471 WP_003056995.1 DUF3013 family protein -
  MGAS15252_RS07465 (MGAS15252_1539) pabB 1541375..1543132 (+) 1758 WP_014407875.1 aminodeoxychorismate synthase component I -
  MGAS15252_RS07470 (MGAS15252_1540) - 1543165..1543731 (+) 567 WP_014407876.1 aminodeoxychorismate/anthranilate synthase component II -
  MGAS15252_RS07475 (MGAS15252_1541) rarA 1543764..1545032 (+) 1269 WP_011285735.1 replication-associated recombination protein A Machinery gene
  MGAS15252_RS07485 (MGAS15252_1544) - 1545532..1545972 (+) 441 WP_011889182.1 GNAT family N-acetyltransferase -
  MGAS15252_RS07490 (MGAS15252_1545) - 1546027..1546533 (+) 507 WP_014407878.1 DNA topology modulation protein -
  MGAS15252_RS07495 (MGAS15252_1546) smeZ 1546782..1547483 (+) 702 WP_041174350.1 streptococcal mitogenic exotoxin SmeZ -
  MGAS15252_RS09250 (MGAS15252_1547) - 1547899..1548033 (-) 135 WP_011018269.1 hypothetical protein -
  MGAS15252_RS07505 (MGAS15252_1548) - 1548212..1549840 (+) 1629 WP_014407880.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46615.04 Da        Isoelectric Point: 6.3774

>NTDB_id=35084 MGAS15252_RS07475 WP_011285735.1 1543764..1545032(+) (rarA) [Streptococcus pyogenes MGAS15252]
MPDHLALRMRPKTISEVIGQKHLVGEGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTRYAFRTFNATIDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGTIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKTAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPDAQVHTVTALDAAQRIGFPEARILIANVV
IDLALSPKSNSAYLAMDAALADLRTSGNLPIPRHLRDGHYAGSKDLGNAKDYLYPHAYPEKWVKQQYLPDKLVGHHYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=35084 MGAS15252_RS07475 WP_011285735.1 1543764..1545032(+) (rarA) [Streptococcus pyogenes MGAS15252]
ATGCCTGATCATTTAGCGCTCAGAATGCGCCCCAAAACCATTTCAGAGGTCATCGGACAAAAACACCTTGTTGGCGAAGG
CAAAATCATCCGTCGCATGGTGGAAGCAAATAGACTATCGTCCATGATCCTCTATGGCCCTCCAGGAATCGGTAAAACTT
CCATTGCTTCTGCTATTGCTGGTACTACTAGATATGCCTTTCGGACCTTTAATGCCACCATTGACAGCAAAAAACGTCTC
CAAGAAATTGCGGAAGAAGCTAAATTTTCTGGTGGCTTGGTATTATTACTAGACGAGATTCATCGCCTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAACGGCACCATTATCATGATTGGCGCAACCACTGAGAACCCCTTCTTTTCAG
TGACACCCGCTATCAGAAGCAGGGTCCAGATTTTTGAATTGGAACCACTTTCTAACGAGGATATTAAAACAGCCATTCAG
CTAGCAATTTCCGACAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACCATGGATAAAAACGGAGACGGGCATTAT
GATGTTTTATCTGCCTTACAAAAATCCATTAGAGGTTCTGATGTCAATGCTAGCCTGCACTACGCCGCTCGTTTAGTAGA
AGCTGGAGACTTGCCTAGTTTAGCAAGACGATTGACCATTATTGCTTACGAAGATATTGGCTTAGCCAACCCTGACGCCC
AAGTTCATACCGTCACCGCACTAGATGCCGCTCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATCGCTAACGTGGTC
ATTGATTTGGCTCTATCACCTAAATCCAATTCAGCTTATTTAGCTATGGATGCAGCTTTAGCTGATTTGAGAACATCAGG
TAACCTCCCCATTCCAAGGCATCTTAGAGACGGGCATTATGCTGGCAGCAAGGACCTAGGCAATGCCAAAGATTACCTCT
ACCCACACGCCTACCCTGAAAAATGGGTCAAACAACAATACCTACCAGATAAATTAGTAGGACATCATTATTTTGAAGCC
AATGAAACCGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGTATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(174-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.952

98.815

0.592

Multiple sequence alignment