Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FOB91_RS08915 Genome accession   NZ_CP046328
Coordinates   1847907..1848695 (+) Length   262 a.a.
NCBI ID   WP_008808441.1    Uniprot ID   A8AVD7
Organism   Streptococcus gordonii strain FDAARGOS_683     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1842907..1853695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB91_RS08905 (FOB91_08905) - 1843370..1844584 (+) 1215 WP_011999940.1 pyridoxal phosphate-dependent aminotransferase -
  FOB91_RS08910 (FOB91_08910) - 1844961..1847621 (+) 2661 WP_011999941.1 SEC10/PgrA surface exclusion domain-containing protein -
  FOB91_RS08915 (FOB91_08915) codY 1847907..1848695 (+) 789 WP_008808441.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FOB91_RS08920 (FOB91_08920) - 1848695..1849252 (+) 558 WP_011999942.1 cysteine hydrolase family protein -
  FOB91_RS08925 (FOB91_08925) aspS 1849652..1851388 (+) 1737 WP_011999944.1 aspartate--tRNA ligase -
  FOB91_RS08930 (FOB91_08930) gatC 1851592..1851894 (+) 303 WP_005591696.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  FOB91_RS08935 (FOB91_08935) gatA 1851894..1853360 (+) 1467 WP_011999945.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29801.06 Da        Isoelectric Point: 5.0874

>NTDB_id=350441 FOB91_RS08915 WP_008808441.1 1847907..1848695(+) (codY) [Streptococcus gordonii strain FDAARGOS_683]
MAHLLEKTRKITSILKRSEEQLQEELPYNDITRQLAEIMDCNACIVNSKGRLLGYFMRYKTNNDRVEAFYQTKMFPDDYI
RSANLIYDTEANLPVEHELSIFPVETQSDFPDGLTTIAPIHVSGIRLGSLIIWRNDEKFDNDDLVLVEISSTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGHLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPDVFEEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=350441 FOB91_RS08915 WP_008808441.1 1847907..1848695(+) (codY) [Streptococcus gordonii strain FDAARGOS_683]
ATGGCACATTTATTAGAAAAAACAAGAAAAATTACATCTATTTTGAAGCGCTCTGAAGAGCAACTTCAAGAAGAGTTGCC
ATACAATGACATTACAAGACAGTTAGCAGAAATTATGGACTGTAATGCTTGTATTGTTAATAGCAAGGGACGTTTGTTGG
GTTACTTTATGCGGTACAAAACAAATAATGACCGTGTAGAGGCCTTCTACCAAACTAAAATGTTCCCAGATGATTATATT
CGTTCTGCTAATTTAATTTACGATACAGAGGCTAATTTGCCAGTCGAGCATGAATTATCCATCTTTCCGGTTGAGACACA
GTCGGATTTTCCAGATGGTTTGACAACTATTGCACCAATTCATGTTTCAGGGATTCGTTTGGGTTCCTTGATTATTTGGC
GAAATGACGAGAAATTTGATAATGATGATTTGGTCTTAGTAGAAATTTCAAGTACCGTTGTGGGCATTCAGTTATTGAAT
TTCCAAAGAGAAGAAGATGAAAAGAATATCCGTCGTCGTACAGCAGTGACAATGGCGGTAAACACTTTGTCTTACTCAGA
ATTACGGGCTGTTTCGGCCATCCTAGGAGAACTAAATGGGAATGAAGGCCACTTGACAGCTTCTGTCATTGCTGACCGTA
TTGGAATTACGCGGTCTGTTATTGTCAATGCCTTGCGTAAGCTAGAGAGTGCTGGGATCATTGAGAGCCGGTCTTTGGGA
ATGAAGGGGACCTATCTGAAAGTGTTGATTCCAGATGTTTTTGAGGAAATTAAAAAGAGGGACTACTGA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AVD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.214

100

0.622
  codY Bacillus subtilis subsp. subtilis str. 168

47.967

93.893

0.45