Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   E1H32_RS11475 Genome accession   NZ_CP037830
Coordinates   2451539..2453371 (-) Length   610 a.a.
NCBI ID   WP_074105827.1    Uniprot ID   -
Organism   Clostridioides difficile strain Cd9     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2446539..2458371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1H32_RS11455 (E1H32_11690) - 2446563..2447927 (-) 1365 WP_074105825.1 aldehyde dehydrogenase -
  E1H32_RS11460 (E1H32_11695) - 2448239..2448763 (-) 525 WP_009897366.1 flavodoxin domain-containing protein -
  E1H32_RS11465 (E1H32_11700) - 2448813..2449292 (-) 480 WP_231303003.1 MarR family winged helix-turn-helix transcriptional regulator -
  E1H32_RS11470 (E1H32_11705) hflX 2449543..2450814 (-) 1272 WP_165481874.1 GTPase HflX -
  E1H32_RS11475 (E1H32_11710) rcrQ 2451539..2453371 (-) 1833 WP_074105827.1 ABC transporter ATP-binding protein Regulator
  E1H32_RS11480 (E1H32_11715) - 2453364..2455610 (-) 2247 WP_003433859.1 ABC transporter ATP-binding protein -
  E1H32_RS11485 (E1H32_11720) - 2455678..2456139 (-) 462 WP_003433857.1 MarR family winged helix-turn-helix transcriptional regulator -
  E1H32_RS11490 (E1H32_11730) - 2456444..2457010 (-) 567 WP_003423380.1 beta-class carbonic anhydrase -
  E1H32_RS11495 (E1H32_11735) - 2457697..2458035 (+) 339 WP_003423377.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68013.84 Da        Isoelectric Point: 6.2927

>NTDB_id=350115 E1H32_RS11475 WP_074105827.1 2451539..2453371(-) (rcrQ) [Clostridioides difficile strain Cd9]
MSRIGRGPMGKSMGAGQKANDFKGTMRKLIAYLSKFKISIILVIVFAIGSASFSIVGPKILGKATTKIFEGLVSKVSGGN
VGIDFNAIGKILTFLLFLYLISALFSFIQGFIMSGISQKVSYNLRKEISAKLDRLPMKYFDTKTHGEILSRITNDIDTLN
QSLNQSMTQLITSVTTMIGVLIMMLSISGIMTLVAVLILPISMFVISRIIKKSQKYFRYQQEYLGNVNGQVEETYSGQTI
VKAFNREDEVIEEFDKLNDSLYNSAWKSQFLSGIMQPLMMFIGNLGYVMVSILGGWLAIKKTIEVGDIQSFIQYVRNFTQ
PMTQIAQVANLLQSTAAASERVFEFLEEEEEVQIVENAVSIDGLEGKIDFENVNFGYNPNKTIINDFSVNVKPGQKVAIV
GPTGAGKTTIVKLLMRFYDVNSGSILIDGHNIKDFNRSELREMFGMVLQDTWLFSGSIMENIRYGKLNATDEEVIEAAKS
AHVHRFIKTLPDGYKMKLNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVLIQKAMDNLMEGRTSFVIA
HRLSTIRDADMILVMNEGDIVEQGNHEELLKKGGFYANLYNSQFEEDEAM

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=350115 E1H32_RS11475 WP_074105827.1 2451539..2453371(-) (rcrQ) [Clostridioides difficile strain Cd9]
ATGAGTAGAATTGGAAGAGGTCCTATGGGAAAATCTATGGGAGCAGGACAAAAAGCAAATGACTTTAAAGGGACTATGCG
AAAACTAATTGCATATTTATCTAAATTTAAAATATCAATAATTTTAGTAATTGTATTTGCTATTGGTAGTGCGTCGTTTT
CTATAGTAGGTCCAAAAATTTTAGGAAAGGCAACTACAAAGATATTTGAAGGGCTAGTGAGTAAAGTTTCTGGAGGAAAC
GTAGGTATAGATTTTAATGCAATTGGAAAAATCTTAACCTTTTTACTTTTCCTTTATTTGATAAGTGCACTGTTCTCTTT
TATACAAGGATTTATAATGAGTGGAATTTCTCAAAAAGTATCCTATAATTTAAGAAAAGAGATTTCAGCAAAATTGGATA
GATTACCAATGAAGTATTTTGATACTAAGACGCATGGTGAAATATTATCGAGAATTACGAATGATATAGATACTTTAAAT
CAAAGTTTAAATCAAAGTATGACACAGCTTATAACATCAGTAACAACTATGATAGGTGTTTTGATAATGATGTTATCTAT
AAGTGGAATTATGACATTAGTGGCAGTTTTAATATTACCAATATCAATGTTTGTAATTTCAAGAATAATAAAGAAATCAC
AAAAATACTTTAGATATCAACAAGAATATTTAGGAAATGTAAATGGTCAAGTTGAGGAAACTTACAGTGGCCAAACAATA
GTAAAAGCATTTAATCGTGAGGATGAAGTAATTGAAGAGTTTGATAAACTAAATGATAGCCTGTATAATTCAGCGTGGAA
ATCTCAATTTTTATCAGGTATAATGCAACCACTTATGATGTTTATTGGAAACTTGGGATATGTAATGGTATCAATCTTAG
GAGGTTGGCTTGCAATTAAGAAAACAATTGAGGTTGGAGACATACAGTCATTTATACAATATGTAAGAAACTTTACACAG
CCAATGACTCAGATTGCACAGGTTGCCAATTTATTGCAATCAACAGCAGCAGCTTCTGAAAGAGTATTTGAGTTTTTAGA
AGAGGAAGAAGAAGTCCAAATTGTTGAAAATGCAGTTTCAATAGATGGTTTAGAAGGTAAAATTGATTTTGAAAATGTCA
ACTTTGGATATAACCCAAACAAGACTATAATAAATGATTTCTCAGTAAATGTTAAACCTGGTCAAAAAGTTGCTATTGTT
GGACCTACAGGAGCAGGTAAAACTACAATAGTTAAACTGTTAATGAGATTTTATGATGTTAATAGCGGTTCAATACTGAT
TGATGGTCATAATATTAAAGATTTTAATCGTAGTGAGCTTAGAGAAATGTTTGGTATGGTTCTTCAAGATACATGGTTAT
TTAGTGGTTCAATTATGGAAAATATAAGATATGGTAAGTTGAATGCTACAGATGAAGAAGTTATAGAGGCTGCTAAATCT
GCACATGTTCATAGATTTATTAAGACATTACCAGATGGATATAAGATGAAATTAAATGAAGAAGCAAGTAATGTTTCTCA
AGGTCAAAAACAATTATTGACTATAGCTCGTGCTATTTTAGCTGATCCTAAAATTTTAATATTAGATGAAGCTACAAGTT
CTGTCGATACTAGAACAGAAGTATTGATTCAAAAAGCTATGGATAATCTTATGGAAGGTAGAACAAGTTTTGTTATAGCC
CACAGATTATCAACTATACGTGATGCTGATATGATTCTTGTAATGAATGAAGGAGATATAGTTGAACAAGGAAATCATGA
GGAACTTCTAAAGAAAGGCGGATTCTATGCCAATCTTTACAATTCTCAATTTGAAGAAGATGAAGCAATGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(40-322)

ABC transporter (ABC_tran)

(385-533)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.607

96.885

0.5

Multiple sequence alignment