Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   GJV01_RS31905 Genome accession   NZ_CP046061
Coordinates   6708794..6709318 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain 1811-13R031     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6703794..6714318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV01_RS31890 aroB 6704910..6706016 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  GJV01_RS31895 aroK 6706066..6706584 (-) 519 WP_003095833.1 shikimate kinase AroK -
  GJV01_RS31900 pilQ 6706596..6708740 (-) 2145 WP_023465329.1 type 4a pilus secretin PilQ Machinery gene
  GJV01_RS31905 comL/pilP 6708794..6709318 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  GJV01_RS31910 pilO 6709315..6709938 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  GJV01_RS31915 pilN 6709935..6710531 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  GJV01_RS31920 pilM 6710531..6711595 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  GJV01_RS31925 - 6711780..6714251 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=349935 GJV01_RS31905 WP_003095836.1 6708794..6709318(-) (comL/pilP) [Pseudomonas aeruginosa strain 1811-13R031]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=349935 GJV01_RS31905 WP_003095836.1 6708794..6709318(-) (comL/pilP) [Pseudomonas aeruginosa strain 1811-13R031]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362