Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   GJV01_RS29225 Genome accession   NZ_CP046061
Coordinates   6104959..6105384 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 1811-13R031     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6099959..6110384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV01_RS29210 pilX 6100523..6101110 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  GJV01_RS29215 pilY1 6101122..6104613 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  GJV01_RS29220 pilY2 6104615..6104962 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  GJV01_RS29225 comF 6104959..6105384 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  GJV01_RS29230 ispH 6105431..6106375 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GJV01_RS29235 fkpB 6106461..6106901 (-) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  GJV01_RS29240 lspA 6106894..6107403 (-) 510 WP_003110420.1 signal peptidase II -
  GJV01_RS29245 ileS 6107396..6110227 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=349929 GJV01_RS29225 WP_003094721.1 6104959..6105384(+) (comF) [Pseudomonas aeruginosa strain 1811-13R031]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=349929 GJV01_RS29225 WP_003094721.1 6104959..6105384(+) (comF) [Pseudomonas aeruginosa strain 1811-13R031]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383