Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   GJV01_RS10860 Genome accession   NZ_CP046061
Coordinates   2308861..2309475 (-) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain 1811-13R031     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2303861..2314475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV01_RS10835 - 2304317..2304580 (+) 264 WP_003109484.1 DUF1653 domain-containing protein -
  GJV01_RS10840 topA 2304671..2307277 (+) 2607 WP_003091201.1 type I DNA topoisomerase -
  GJV01_RS10845 - 2307384..2307902 (+) 519 WP_003091199.1 DUF6586 family protein -
  GJV01_RS10850 - 2308109..2308342 (+) 234 WP_003109483.1 hypothetical protein -
  GJV01_RS10855 sulA 2308364..2308849 (-) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  GJV01_RS10860 dinR/lexA 2308861..2309475 (-) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  GJV01_RS10865 psrA 2309707..2310408 (+) 702 WP_003091195.1 transcriptional regulator PsrA -
  GJV01_RS10870 nagZ 2310610..2311608 (+) 999 WP_031692626.1 beta-N-acetylhexosaminidase -
  GJV01_RS10875 - 2311620..2312357 (+) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  GJV01_RS10880 - 2312404..2313033 (-) 630 WP_003091190.1 CsiV family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=349880 GJV01_RS10860 WP_003091196.1 2308861..2309475(-) (dinR/lexA) [Pseudomonas aeruginosa strain 1811-13R031]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=349880 GJV01_RS10860 WP_003091196.1 2308861..2309475(-) (dinR/lexA) [Pseudomonas aeruginosa strain 1811-13R031]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCGAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCGCGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCCGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGACGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387

Multiple sequence alignment