Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   A0073_RS00680 Genome accession   NZ_CP037747
Coordinates   121945..122457 (+) Length   170 a.a.
NCBI ID   WP_131936134.1    Uniprot ID   -
Organism   Campylobacter helveticus strain 2013D-9613     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 116945..127457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0073_RS00655 (A0073_00655) - 117371..117748 (+) 378 WP_082200161.1 hypothetical protein -
  A0073_RS00660 (A0073_00660) - 117758..118485 (+) 728 Protein_136 phosphatidate cytidylyltransferase -
  A0073_RS00665 (A0073_00665) dxr 118482..119546 (+) 1065 WP_082200159.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  A0073_RS00670 (A0073_00670) - 119543..120931 (+) 1389 WP_131936132.1 M99 family carboxypeptidase catalytic domain-containing protein -
  A0073_RS00675 (A0073_00675) tsaD 120928..121935 (+) 1008 WP_082200157.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  A0073_RS00680 (A0073_00680) ctsG 121945..122457 (+) 513 WP_131936134.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  A0073_RS00685 (A0073_00685) - 122454..123023 (+) 570 WP_131936136.1 DUF2920 family protein -
  A0073_RS00690 (A0073_00690) - 123029..123688 (+) 660 WP_139018047.1 DUF2920 family protein -
  A0073_RS00695 (A0073_00695) - 123678..124868 (+) 1191 WP_252972880.1 DUF2920 family protein -
  A0073_RS00700 (A0073_00700) - 124855..125154 (-) 300 WP_131936140.1 hypothetical protein -
  A0073_RS00705 (A0073_00705) - 125154..125750 (-) 597 WP_082200151.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18299.15 Da        Isoelectric Point: 6.3667

>NTDB_id=349873 A0073_RS00680 WP_131936134.1 121945..122457(+) (ctsG) [Campylobacter helveticus strain 2013D-9613]
MKKAFTILELVFVIIILGILAAIALPKLSSSKDEAEISKALNNLRTFINDVSVYALKNDKLANTKLISNVSGVEEVDLSQ
NLSDVAFKVGDDERCVEFVFMQGVSFVLMGISSNDNVKNAIKAVANGADESVLTNADFTSKSKNKACVALSQSESFKALA
NKTYLLLGTK

Nucleotide


Download         Length: 513 bp        

>NTDB_id=349873 A0073_RS00680 WP_131936134.1 121945..122457(+) (ctsG) [Campylobacter helveticus strain 2013D-9613]
ATGAAAAAGGCTTTTACGATTTTAGAACTTGTTTTTGTGATTATCATACTTGGAATTTTAGCAGCTATTGCCCTGCCAAA
ACTTAGCTCTAGCAAAGATGAAGCGGAAATTAGCAAGGCTTTGAATAATCTTAGAACTTTCATTAACGATGTGAGCGTTT
ATGCACTTAAAAACGATAAATTAGCAAATACGAAGCTTATTAGCAATGTTAGCGGCGTGGAGGAAGTGGATTTGTCGCAG
AATTTAAGCGATGTGGCTTTTAAGGTGGGCGATGATGAAAGATGTGTGGAATTTGTTTTTATGCAAGGGGTGAGTTTTGT
TTTAATGGGAATTTCTAGTAATGATAATGTCAAAAATGCCATTAAAGCGGTAGCAAATGGAGCCGATGAGAGTGTTTTAA
CAAATGCTGATTTTACCAGTAAATCCAAAAATAAGGCTTGTGTGGCATTGAGTCAAAGCGAAAGCTTTAAAGCCTTAGCG
AATAAGACCTATTTATTATTAGGCACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

63.529

100

0.635

Multiple sequence alignment