Detailed information NTG0034966

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: SYNPCCP_RS05170
• Genome accession: NC_017039
• Coordinates: 1099469..1100623 (-)
• Length: 384 a.a.
• NCBI ID: WP_010872202.1
• Uniprot ID: -
• Organism: Synechocystis sp. PCC 6803 substr. PCC-P
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1094469..1105623

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SYNPCCP_RS05130 (SYNPCCP_0992)	ribH	1094904..1095398 (-)	495	WP_010872197.1	6,7-dimethyl-8-ribityllumazine synthase	-
SYNPCCP_RS05135 (SYNPCCP_0993)	psbZ	1095503..1095691 (-)	189	WP_014407093.1	photosystem II reaction center protein PsbZ	-
SYNPCCP_RS16740 (SYNPCCP_0994)	-	1096027..1096938 (-)	912	WP_010872199.1	M48 family metallopeptidase	-
SYNPCCP_RS17765	-	1097113..1097244 (+)	132	WP_255345285.1	hypothetical protein	-
SYNPCCP_RS05155 (SYNPCCP_0995)	-	1097332..1098318 (+)	987	WP_010872200.1	S1 RNA-binding domain-containing protein	-
SYNPCCP_RS16745 (SYNPCCP_0996)	-	1098578..1099426 (+)	849	WP_010872201.1	IS630-like element ISTcSa family transposase	-
SYNPCCP_RS05170 (SYNPCCP_0997)	recF	1099469..1100623 (-)	1155	WP_010872202.1	DNA replication/repair protein RecF	Machinery gene
SYNPCCP_RS05175 (SYNPCCP_0998)	-	1100665..1102269 (-)	1605	WP_010872203.1	ABC transporter ATP-binding protein	-
SYNPCCP_RS05180 (SYNPCCP_0999)	pyk	1102538..1104313 (-)	1776	WP_010872204.1	pyruvate kinase	-
SYNPCCP_RS05185 (SYNPCCP_1000)	-	1104501..1104902 (+)	402	WP_010872205.1	DUF1824 family protein	-

Sequence

Protein

• Length: 384 a.a.
• Molecular weight: 43743.84 Da
• Isoelectric Point: 6.3184

>NTDB_id=34966 SYNPCCP_RS05170 WP_010872202.1 1099469..1100623(-) (recF) [Synechocystis sp. PCC 6803 substr. PCC-P]
MYLKKLYLRAFRNYLEEEVEFSAQKTILVGNNAQGKSNLLEAVELLATLKSHRTSRDQELVLDGAANGQIKALLERQYSV
AELEIDLRRSGRRNLRINQNQCRRQLDFLGCLNAVEFSCLDLDLVRGAPDCRRQWLDTLLTQLEPLYAHLLGQYQHIVKQ
RNALLKSLRQQWETGLALGEESTASLSLWDQQLVEMGTRVVRRRARGLARLAPLAQEWHGRISGGNETLTVTYQPNVTWV
GDDPEVVHQAFLEKLAQRRSAELHLGTTVVGPHRDEVGFVLDDTPARTYGSQGQQRTLVLALKLAELSLIETVIGEPPLL
LLDDVLAELDLDRQGQLLMAIEDRFQTLITTTHLSRFDDRWRRSAQILKVNAGQLEERWPSEID

Nucleotide

• Length: 1155 bp

>NTDB_id=34966 SYNPCCP_RS05170 WP_010872202.1 1099469..1100623(-) (recF) [Synechocystis sp. PCC 6803 substr. PCC-P]
ATGTACCTGAAAAAACTCTATTTACGGGCCTTTCGCAATTACCTCGAAGAAGAGGTGGAATTTTCTGCTCAAAAAACCAT
TTTGGTGGGCAATAATGCCCAGGGGAAATCTAACTTATTGGAAGCGGTGGAACTGTTGGCAACGCTCAAAAGCCATCGCA
CTAGTCGGGATCAGGAATTGGTGCTAGACGGGGCGGCCAATGGGCAAATTAAAGCCCTACTGGAAAGGCAATACAGTGTG
GCGGAGTTAGAAATTGACCTACGGCGATCGGGGCGGCGCAACCTACGCATTAACCAAAATCAATGTCGTCGTCAGTTGGA
TTTTTTAGGCTGTTTAAATGCGGTGGAATTTTCCTGTTTAGATTTGGATTTAGTCCGGGGAGCGCCCGATTGTCGCCGTC
AATGGCTAGATACTTTGTTAACCCAGCTAGAACCCCTCTATGCCCATCTGTTGGGGCAGTACCAGCACATTGTTAAGCAA
AGAAATGCTCTACTAAAAAGCCTACGACAACAATGGGAAACGGGACTAGCTTTGGGGGAAGAGTCGACAGCTTCTTTGTC
TCTCTGGGACCAGCAGTTGGTGGAAATGGGCACTAGGGTAGTCCGCCGTCGGGCGAGGGGTTTAGCCCGTCTTGCTCCTT
TGGCCCAGGAATGGCATGGGCGCATTAGCGGTGGCAATGAAACCCTGACCGTTACCTATCAACCCAATGTCACCTGGGTG
GGGGATGATCCGGAAGTGGTGCACCAGGCTTTTTTAGAAAAATTAGCCCAACGGCGATCGGCAGAATTACATCTGGGGAC
AACGGTGGTGGGGCCCCATCGGGACGAAGTGGGGTTTGTCCTCGACGACACTCCCGCTAGAACCTATGGCTCCCAGGGAC
AGCAAAGAACTCTAGTCCTAGCATTAAAATTGGCGGAATTGAGCTTGATTGAAACGGTTATTGGAGAACCACCACTGTTG
TTATTGGACGATGTCTTGGCGGAATTAGACCTCGATCGCCAGGGACAATTGTTAATGGCCATTGAGGATCGTTTTCAAAC
CCTGATCACCACCACCCATTTAAGTCGTTTTGATGACCGCTGGCGGCGATCGGCCCAGATTCTCAAAGTTAATGCTGGTC
AACTAGAGGAACGGTGGCCGTCCGAAATTGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	38.727	98.177	0.38
recF	Streptococcus pneumoniae R6	39.266	92.188	0.362