Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   ERJ71_RS12625 Genome accession   NZ_CP036496
Coordinates   2810176..2811945 (+) Length   589 a.a.
NCBI ID   WP_019687273.1    Uniprot ID   A0A378XY21
Organism   Paenibacillus polymyxa strain KN-03     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2805176..2816945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ERJ71_RS12605 (ERJ71_12510) - 2806169..2806867 (-) 699 WP_019687269.1 LysR family transcriptional regulator -
  ERJ71_RS27440 (ERJ71_12515) - 2806900..2807073 (+) 174 WP_397308252.1 epoxide hydrolase N-terminal domain-containing protein -
  ERJ71_RS12610 (ERJ71_12520) - 2807460..2809133 (+) 1674 WP_019687270.1 RICIN domain-containing protein -
  ERJ71_RS12615 - 2809330..2809506 (+) 177 WP_019687271.1 hypothetical protein -
  ERJ71_RS12620 (ERJ71_12525) - 2809689..2810096 (+) 408 WP_019687272.1 MarR family winged helix-turn-helix transcriptional regulator -
  ERJ71_RS12625 (ERJ71_12530) rcrP 2810176..2811945 (+) 1770 WP_019687273.1 ABC transporter ATP-binding protein Regulator
  ERJ71_RS12630 (ERJ71_12535) rcrQ 2811932..2813782 (+) 1851 WP_019687274.1 ABC transporter ATP-binding protein Regulator
  ERJ71_RS12635 (ERJ71_12540) - 2814028..2814756 (+) 729 WP_420892364.1 IclR family transcriptional regulator -
  ERJ71_RS12640 (ERJ71_12545) - 2814943..2815632 (+) 690 WP_019687275.1 type 1 glutamine amidotransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65162.59 Da        Isoelectric Point: 7.8033

>NTDB_id=349176 ERJ71_RS12625 WP_019687273.1 2810176..2811945(+) (rcrP) [Paenibacillus polymyxa strain KN-03]
MLKIFKYLKKNEWMFVLCSLAFIVVQVWLDLKLPDYMAEITTKLQTAGTPMSDLLIPGIYMLLCAVGSMIASIIVGFFAA
KVAAGLAMRLRAMVFDKALSFSMEEMNSFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIAKIADKNWQWTAS
TGVAVAVLILMLSVIVIFALPSFQKIQRLTDNLNRVTREHLTGLRVVRAYNADQYQEEKFGQANTELMNTNLFANRLMTM
VGPGMTFIMSGLSVSIYWIGAYLINGTAVPDRISLFSNMVVFSSYAVQVVMAFMMVSMIFFLMPRASISAKRIMEVLNTE
SRIIDGHETAGEEGVMGQVEFRNVSFKYPDAEEPVLRNISFTAKQGETVAFIGATGSGKTSVINMISRFYDVTEGEVLVD
GVNVRNYKQQTLHNKIGYLPQRAVLFSGTVASNVSYGDNGRAEASEKLVKTAVEIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKQETGHATTLIVAQRIGTIKDADRIIVLDQGEIVGNGT
HKELMANCSTYQEIAYSQLSKEELVHGQE

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=349176 ERJ71_RS12625 WP_019687273.1 2810176..2811945(+) (rcrP) [Paenibacillus polymyxa strain KN-03]
ATGCTGAAGATATTCAAATATCTCAAGAAAAATGAATGGATGTTCGTGCTTTGCAGCTTGGCCTTCATCGTTGTGCAGGT
GTGGCTGGATTTGAAGCTGCCTGATTATATGGCCGAAATTACAACCAAGCTGCAAACTGCAGGAACGCCGATGTCGGACC
TGCTGATTCCCGGTATTTATATGCTGTTATGTGCTGTCGGCAGTATGATTGCATCTATTATTGTCGGCTTTTTTGCGGCA
AAGGTCGCGGCAGGACTGGCCATGCGCCTGCGTGCGATGGTCTTTGACAAGGCCTTATCTTTTTCGATGGAAGAGATGAA
CAGCTTTTCAACAGCCAGCCTTATTACCCGCTCCACGAACGATGTTACCCAAATTCAAACGGTGGTTGCGCTGGGGTTGC
AGGTGATCATCAAGGCGCCGATTCTGGCCGTGTGGGCCATTGCAAAGATCGCAGATAAAAACTGGCAGTGGACTGCCTCT
ACAGGAGTGGCTGTGGCTGTCCTGATCCTGATGCTGAGTGTCATTGTTATTTTTGCTCTCCCCAGTTTCCAAAAAATCCA
ACGTCTCACTGATAATCTGAACAGGGTAACACGTGAGCATCTGACGGGGCTTCGCGTAGTGCGCGCTTATAATGCAGATC
AGTATCAGGAGGAGAAGTTTGGGCAGGCCAATACCGAATTGATGAATACAAACCTGTTTGCGAACCGGTTAATGACAATG
GTTGGTCCGGGCATGACCTTTATTATGTCGGGTCTGAGTGTCTCGATTTATTGGATTGGCGCTTACCTGATTAACGGAAC
GGCCGTGCCGGACCGCATTTCGCTATTCTCTAATATGGTCGTATTCTCATCTTATGCGGTGCAGGTGGTCATGGCCTTTA
TGATGGTAAGTATGATATTCTTCCTGATGCCTCGAGCTTCGATTTCTGCCAAACGGATTATGGAGGTATTGAATACCGAA
TCCCGCATCATTGACGGGCATGAGACAGCTGGAGAAGAGGGCGTTATGGGTCAGGTGGAATTCCGTAATGTCAGCTTTAA
ATATCCGGATGCGGAGGAGCCTGTGCTTCGCAACATTAGCTTTACGGCAAAACAAGGCGAGACGGTTGCCTTTATTGGCG
CAACAGGCAGCGGTAAAACCAGCGTAATCAATATGATTTCTCGTTTCTACGATGTGACTGAGGGAGAGGTGCTCGTGGAT
GGCGTGAATGTCAGAAACTATAAGCAGCAGACACTCCATAACAAAATCGGGTATCTCCCACAGAGAGCCGTACTTTTCAG
CGGTACAGTGGCATCCAATGTTTCGTATGGCGATAACGGAAGAGCAGAAGCTTCGGAGAAACTCGTCAAAACAGCCGTGG
AGATTGCCCAAGGCACGGAGTTTGTCGAAAAAATGGACGGTCAGTATCAAGGACGGATTTCACAAGGTGGAGCGAACGTG
TCCGGTGGTCAAAAGCAGCGTCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAGATTTATATCTTCGATGATTCCTT
CTCGGCATTGGACTACAGAACAGACCGGATTCTGCGCTCGGCGCTTAAACAAGAAACCGGCCATGCTACGACACTCATTG
TTGCTCAGCGCATAGGCACCATTAAGGACGCTGACCGGATTATCGTTCTGGACCAGGGCGAGATTGTAGGGAACGGCACA
CACAAAGAGCTGATGGCGAATTGCAGCACCTATCAGGAGATCGCTTATTCGCAGCTTTCGAAGGAGGAACTCGTACATGG
ACAAGAATGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378XY21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.5

100

0.535

Multiple sequence alignment