Detailed information NTG0348701

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: EYC12_RS04695
• Genome accession: NZ_CP036396
• Coordinates: 977866..978921 (-)
• Length: 351 a.a.
• NCBI ID: WP_000786643.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain 12C8
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 972866..983921

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EYC12_RS04670	-	973426..974829 (-)	1404	WP_000694860.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EYC12_RS04675	comB10	974894..976030 (-)	1137	WP_001045899.1	DNA type IV secretion system protein ComB10	Machinery gene
EYC12_RS04680	comB9	976023..976985 (-)	963	WP_001987609.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EYC12_RS04685	comB8	976985..977728 (-)	744	WP_000660543.1	virB8 family protein	Machinery gene
EYC12_RS04690	comB7	977725..977850 (-)	126	WP_001217874.1	hypothetical protein	Machinery gene
EYC12_RS04695	comB6	977866..978921 (-)	1056	WP_000786643.1	P-type conjugative transfer protein TrbL	Machinery gene
EYC12_RS04700	-	978927..979922 (-)	996	WP_000468812.1	PDZ domain-containing protein	-
EYC12_RS04705	-	979922..980215 (-)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
EYC12_RS04710	panD	980226..980576 (-)	351	WP_000142212.1	aspartate 1-decarboxylase	-
EYC12_RS04715	-	980566..982788 (-)	2223	WP_001051530.1	AAA family ATPase	-
EYC12_RS04720	-	982788..983063 (-)	276	WP_000784917.1	ATP-dependent Clp protease adaptor ClpS	-
EYC12_RS04725	-	983083..983496 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39827.79 Da
• Isoelectric Point: 8.8165

>NTDB_id=348701 EYC12_RS04695 WP_000786643.1 977866..978921(-) (comB6) [Helicobacter pylori strain 12C8]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNGVVALAFMLFAYRSLKEQNLFSASALTEALLFVGFFALFNY
ALKNPMHFYEFFQNAIFIAPNMITQSLSQSLSNFSNHTLSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLMGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMRESATKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNET

Nucleotide

• Length: 1056 bp

>NTDB_id=348701 EYC12_RS04695 WP_000786643.1 977866..978921(-) (comB6) [Helicobacter pylori strain 12C8]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACTTTGCATGCGCAATTGGTGTTTAATGGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATCTCTTCAGCGCTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCATTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCACCTAACATGATCACACAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACACGCTTTCTTTAGATTTTATCTTTAATCATGGGTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTGAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATTATTTTAGTGTATTTAGAAGTGCATGTGTGGTGCTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTGGCGTGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGA
TGGGCTTTTTAAATGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTAGCGTTATTTTTGTGTTGCGTTTTTATCATAGGCGTGCCTTTTTTTATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTTAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGAGAAAGTGCCACTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAACTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	96.857	99.715	0.966