Detailed information NTG0348640

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: GII87_RS14890
• Genome accession: NZ_CP045922
• Coordinates: 2811923..2813188 (+)
• Length: 421 a.a.
• NCBI ID: WP_004398500.1
• Uniprot ID: O34528
• Organism: Bacillus subtilis strain P8_B1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2806923..2818188

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GII87_RS14870 (GII87_14870)	yrrB	2808294..2808914 (-)	621	WP_010886584.1	tetratricopeptide repeat protein	-
GII87_RS14875 (GII87_14875)	mnmA	2809000..2810115 (-)	1116	WP_004398509.1	tRNA 2-thiouridine(34) synthase MnmA	-
GII87_RS14880 (GII87_14880)	iscSA	2810146..2811285 (-)	1140	WP_003246057.1	cysteine desulfurase family protein	-
GII87_RS14885 (GII87_14885)	cymR	2811304..2811720 (-)	417	WP_003225879.1	cysteine metabolism transcriptional regulator CymR	-
GII87_RS14890 (GII87_14890)	rarA	2811923..2813188 (+)	1266	WP_004398500.1	replication-associated recombination protein A	Machinery gene
GII87_RS14895 (GII87_14895)	tcdA	2813230..2813994 (-)	765	WP_009967893.1	tRNA threonylcarbamoyladenosine dehydratase	-
GII87_RS14905 (GII87_14905)	aspS	2814330..2816108 (-)	1779	WP_003229758.1	aspartate--tRNA ligase	-
GII87_RS14910 (GII87_14910)	hisS	2816122..2817396 (-)	1275	WP_003229755.1	histidine--tRNA ligase	-
GII87_RS14915 (GII87_14915)	yrzK	2817778..2817948 (-)	171	WP_004399157.1	YrzK family protein	-

Sequence

Protein

• Length: 421 a.a.
• Molecular weight: 46514.38 Da
• Isoelectric Point: 7.2043

>NTDB_id=348640 GII87_RS14890 WP_004398500.1 2811923..2813188(+) (rarA) [Bacillus subtilis strain P8_B1]
MKPLAYRMRPTKIEDIIGQQHLVAEDKIIGRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
IVAQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPELIKQALER
ALHDEHRGLGTYSVSIDDQAMEHFAHGCGGDVRSALNALELAVLSTKESADGEIHITLETAEECLQKKSFSHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESIARRLLVIAYEDIGLASPQAGPRVLNAIQTAERVGFPEARIPLANAV
IELCLSPKSNSAILAIDEALADIRAGKIGDVPKHLKDAHYKGAQELGRGIDYKYPHNYDNGWVEQQYLPDPLKNKQYYKP
KQTGKFESALKQVYDKLMKRK

Nucleotide

• Length: 1266 bp

>NTDB_id=348640 GII87_RS14890 WP_004398500.1 2811923..2813188(+) (rarA) [Bacillus subtilis strain P8_B1]
ATGAAGCCATTGGCATATCGGATGCGTCCGACAAAAATAGAGGATATTATCGGCCAGCAGCATCTGGTGGCTGAAGATAA
AATTATTGGCAGAATGGTCCAGGCAAAACATTTGTCATCCATGATTTTGTACGGGCCGCCCGGAATTGGAAAAACATCAA
TCGCAACAGCAATCGCCGGTTCAACAAGTATTGCTTTTCGAAAGCTGAATGCTGTCATTAACAATAAAAAAGATATGGAA
ATCGTAGCTCAGGAAGCCAAGATGTCCGGCCAAGTGATTTTGATTCTGGATGAAGTCCACAGGCTGGATAAAGGAAAACA
GGATTTTCTATTACCCTATTTAGAAAACGGAATGATCATTTTGATCGGAGCAACGACGGCTAACCCGTATCATGCCATTA
ATCCGGCGATCAGAAGCCGGACCCAGATTTTTGAGCTTGAACCGTTAACACCTGAACTGATTAAACAGGCACTGGAACGT
GCGCTCCATGATGAGCATCGGGGCCTTGGCACCTATTCTGTATCCATTGATGATCAGGCGATGGAGCATTTTGCCCACGG
ATGCGGAGGAGATGTCCGCTCCGCTTTAAATGCGCTTGAGCTTGCCGTGTTGTCAACGAAGGAGTCAGCAGACGGTGAAA
TTCACATTACATTAGAAACCGCGGAAGAATGCTTGCAGAAAAAAAGCTTTTCTCACGATAAAGATGGTGACGCGCATTAT
GATGTACTGTCCGCTTTTCAAAAATCAATCCGCGGCTCTGATGCCAACGCTGCTCTTCACTATTTGGCTAGATTAATTGA
AGCCGGTGATCTGGAGAGCATCGCAAGACGATTGCTTGTTATCGCCTATGAGGATATCGGTTTAGCAAGCCCGCAAGCCG
GCCCTAGAGTGCTGAACGCTATTCAGACCGCTGAGCGAGTCGGGTTTCCTGAAGCGCGAATCCCGCTGGCCAACGCAGTT
ATTGAGCTTTGCCTCTCACCGAAATCAAACTCTGCCATTCTGGCAATCGATGAGGCCCTGGCAGATATCAGAGCCGGAAA
AATTGGGGATGTCCCGAAGCATTTAAAAGACGCGCATTATAAAGGAGCTCAGGAATTAGGAAGAGGAATCGACTATAAAT
ACCCGCACAATTACGACAACGGTTGGGTCGAACAACAATACCTCCCTGATCCTCTGAAAAATAAGCAATACTATAAGCCG
AAACAGACTGGAAAGTTCGAATCTGCCTTAAAGCAGGTGTACGATAAATTAATGAAAAGAAAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (172-251)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

3D structure

• AlphaFold DB: O34528

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	100	100	1