Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HELPY_RS00100 Genome accession   NC_012973
Coordinates   13578..13859 (+) Length   93 a.a.
NCBI ID   WP_001272692.1    Uniprot ID   -
Organism   Helicobacter pylori B38     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 8578..18859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HELPY_RS00080 (HELPY_0009) groES 9144..9500 (-) 357 WP_000671934.1 co-chaperone GroES -
  HELPY_RS00085 (HELPY_0010) dnaG 9787..11466 (+) 1680 WP_000601541.1 DNA primase -
  HELPY_RS00090 (HELPY_0011) - 11463..12515 (+) 1053 WP_000721208.1 MnmA/TRMU family protein -
  HELPY_RS00095 (HELPY_0012) - 12605..13432 (+) 828 WP_001154864.1 DUF5718 family protein -
  HELPY_RS00100 (HELPY_0013) comB2 13578..13859 (+) 282 WP_001272692.1 TrbC/VirB2 family protein Machinery gene
  HELPY_RS00105 (HELPY_0014) comB3 13859..14122 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  HELPY_RS00110 (HELPY_0015) comB4 14124..16487 (+) 2364 WP_000890485.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HELPY_RS00115 (HELPY_0016) - 16781..18121 (+) 1341 WP_041200368.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10491.77 Da        Isoelectric Point: 9.1450

>NTDB_id=34831 HELPY_RS00100 WP_001272692.1 13578..13859(+) (comB2) [Helicobacter pylori B38]
MSAHFLKIVFLVGMCVSSLFAEGLEGLFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=34831 HELPY_RS00100 WP_001272692.1 13578..13859(+) (comB2) [Helicobacter pylori B38]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGCT
TTTTAACGCTCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTGGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989

Multiple sequence alignment