Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GIX96_RS20190 Genome accession   NZ_CP045863
Coordinates   4013862..4014626 (+) Length   254 a.a.
NCBI ID   WP_001136210.1    Uniprot ID   Q8X5U1
Organism   Escherichia coli O157:H7 strain ATCC 43890     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4008862..4019626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIX96_RS20170 (GIX96_20170) acpT 4009816..4010403 (+) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -
  GIX96_RS20175 (GIX96_20175) nikA 4010514..4012088 (+) 1575 WP_000953364.1 nickel ABC transporter substrate-binding protein -
  GIX96_RS20180 (GIX96_20180) nikB 4012088..4013032 (+) 945 WP_000947083.1 nickel ABC transporter permease subunit NikB -
  GIX96_RS20185 (GIX96_20185) nikC 4013029..4013862 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  GIX96_RS20190 (GIX96_20190) amiE 4013862..4014626 (+) 765 WP_001136210.1 nickel import ATP-binding protein NikD Regulator
  GIX96_RS20195 (GIX96_20195) nikE 4014623..4015429 (+) 807 WP_000173697.1 nickel import ATP-binding protein NikE -
  GIX96_RS20200 (GIX96_20200) nikR 4015435..4015836 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  GIX96_RS20205 (GIX96_20205) - 4016035..4016781 (+) 747 WP_001301676.1 GntR family transcriptional regulator -
  GIX96_RS20210 (GIX96_20210) - 4016806..4017279 (+) 474 WP_001161553.1 PTS sugar transporter subunit IIA -
  GIX96_RS20215 (GIX96_20215) - 4017276..4017557 (+) 282 WP_000084025.1 PTS sugar transporter subunit IIB -
  GIX96_RS20220 (GIX96_20220) - 4017634..4018992 (+) 1359 WP_001302220.1 PTS galactitol transporter subunit IIC -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26790.39 Da        Isoelectric Point: 6.5997

>NTDB_id=348308 GIX96_RS20190 WP_001136210.1 4013862..4014626(+) (amiE) [Escherichia coli O157:H7 strain ATCC 43890]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=348308 GIX96_RS20190 WP_001136210.1 4013862..4014626(+) (amiE) [Escherichia coli O157:H7 strain ATCC 43890]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTGTCGTTAACCCTGAA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCGACGCTGGGAATTCTGC
CCGCAGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAGACGTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCACGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTTTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGACCTCGACGTGGTAGCACAGGCACGCATTCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAGGCGCCGGGGATGCTGCTGGTCACCCATGATATGGGCGTGGTGGCGCGTCTGGCGGATGACGTAGCGGTAA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTCGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8X5U1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment