Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EYB51_RS04045 Genome accession   NZ_CP036356
Coordinates   576218..576997 (-) Length   259 a.a.
NCBI ID   WP_000421288.1    Uniprot ID   Q81WK7
Organism   Bacillus sp. SYJ     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 571218..581997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYB51_RS04020 uppS 571965..572741 (-) 777 WP_000971301.1 isoprenyl transferase -
  EYB51_RS04025 frr 572827..573384 (-) 558 WP_000531501.1 ribosome recycling factor -
  EYB51_RS04030 pyrH 573387..574109 (-) 723 WP_000042663.1 UMP kinase -
  EYB51_RS04035 tsf 574176..575063 (-) 888 WP_001018581.1 translation elongation factor Ts -
  EYB51_RS04040 rpsB 575167..575868 (-) 702 WP_000111483.1 30S ribosomal protein S2 -
  EYB51_RS04045 codY 576218..576997 (-) 780 WP_000421288.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EYB51_RS04050 hslU 577075..578466 (-) 1392 WP_087966344.1 ATP-dependent protease ATPase subunit HslU -
  EYB51_RS04055 hslV 578489..579031 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  EYB51_RS04060 xerC 579074..579973 (-) 900 WP_001101228.1 tyrosine recombinase XerC -
  EYB51_RS04065 trmFO 580039..581343 (-) 1305 WP_029439592.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.05 Da        Isoelectric Point: 4.7947

>NTDB_id=348137 EYB51_RS04045 WP_000421288.1 576218..576997(-) (codY) [Bacillus sp. SYJ]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=348137 EYB51_RS04045 WP_000421288.1 576218..576997(-) (codY) [Bacillus sp. SYJ]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAATAGTGCTTACACAGCATTTCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTTGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCAGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q81WK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment