Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EYR00_RS00785 Genome accession   NZ_CP036346
Coordinates   178488..180308 (+) Length   606 a.a.
NCBI ID   WP_003535236.1    Uniprot ID   B0N1M1
Organism   Thomasclavelia ramosa DSM 1402     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 173488..185308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EYR00_RS00765 (EYR00_00765) - 174348..174731 (+) 384 WP_003535240.1 DUF956 family protein -
  EYR00_RS00770 (EYR00_00770) - 174899..175579 (+) 681 WP_003535239.1 response regulator transcription factor -
  EYR00_RS00775 (EYR00_00775) - 175566..176621 (+) 1056 WP_003535238.1 sensor histidine kinase -
  EYR00_RS00780 (EYR00_00780) rcrP 176731..178488 (+) 1758 WP_003535237.1 ABC transporter ATP-binding protein Regulator
  EYR00_RS00785 (EYR00_00785) rcrQ 178488..180308 (+) 1821 WP_003535236.1 ABC transporter ATP-binding protein Regulator
  EYR00_RS00790 (EYR00_00790) - 180434..181282 (-) 849 WP_003535235.1 Cof-type HAD-IIB family hydrolase -
  EYR00_RS00795 (EYR00_00795) - 181556..182176 (-) 621 WP_003535234.1 ECF transporter S component -
  EYR00_RS00800 (EYR00_00800) - 182345..183313 (-) 969 WP_003535233.1 P1 family peptidase -
  EYR00_RS00805 (EYR00_00805) - 183464..184129 (+) 666 WP_003535232.1 DUF5680 domain-containing protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 67651.45 Da        Isoelectric Point: 8.5081

>NTDB_id=348106 EYR00_RS00785 WP_003535236.1 178488..180308(+) (rcrQ) [Thomasclavelia ramosa DSM 1402]
MAEGKYLEKNDLKAPGVNMGSKEKSKDFKETWLKLLKYCRKYWIVMVMAIISAIFGTILTLIGPDRLSELTDLITNGIMT
GIDMTRIGKIGLTLVGFYVTSAFFSLFQGFVMTTVTQWVTKNLRRDISRKINRLPISFYNHTSTGDILSRVTNDIDMIGQ
SLNQSVGTLVSSVTLLAGSLIMMLKTNLIMTFTAVLATVIGFALMLVIMSKSQKYFARQQKHLGEINGYVEEIYTGHTIV
KAYNGEVKAKEAFTRQNNNLRNSGFKAQCLSGLMMPIMSFIGNFGYVAVCIIGAALAMSGDISFGVIVAFMMYIRYFTQP
LSQLAQAAQSLQSAAAAGERVFEFLEAQEMADESHKVKRLSKAKGGVEFRHVHFGYDSNKIIINDFSARAEPGQKIAIVG
PTGAGKTTIINLLMRFYEVDRGEIRIDNIPTKDLRREDVHGQFCMVLQDTWLFEGTVRENLVYNTKNISNQIIEEACKAV
GLDHFIRTLPYGYDTVLNDQVNLSQGQKQQLTIARAMIADKPMLILDEATSSVDTRTELQIQKAMDELMEGRTSFVIAHR
LSTIKNADLILVMKDGDIIESGNHEDLLSRGGFYAELYNSQFDKAV

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=348106 EYR00_RS00785 WP_003535236.1 178488..180308(+) (rcrQ) [Thomasclavelia ramosa DSM 1402]
ATGGCAGAAGGAAAGTATTTAGAGAAAAATGATTTAAAAGCTCCTGGGGTTAATATGGGTAGTAAAGAAAAATCTAAAGA
TTTTAAGGAAACATGGTTAAAATTGTTAAAATATTGTAGAAAGTATTGGATTGTAATGGTTATGGCAATTATCAGTGCCA
TATTTGGAACAATATTAACCTTGATAGGTCCAGACAGATTATCAGAATTAACAGATTTAATTACAAATGGAATAATGACG
GGAATTGATATGACAAGGATTGGTAAAATTGGTCTTACATTAGTCGGATTTTATGTTACTAGTGCTTTTTTTTCTTTATT
TCAGGGATTTGTCATGACAACAGTAACTCAGTGGGTTACTAAAAATTTAAGAAGAGATATTTCGCGTAAAATTAATCGCT
TGCCAATTAGTTTTTATAATCATACTTCAACTGGTGATATATTATCGAGAGTTACCAACGATATTGATATGATTGGACAA
TCATTAAATCAGAGTGTTGGAACATTAGTTTCATCAGTCACTTTATTAGCTGGTTCACTTATAATGATGTTAAAAACTAA
TCTCATTATGACTTTTACTGCAGTTCTAGCAACGGTTATAGGTTTTGCTTTAATGCTGGTAATTATGTCTAAATCGCAAA
AATATTTTGCTCGCCAGCAAAAACATCTTGGTGAAATCAATGGATATGTTGAAGAAATTTATACTGGTCATACGATTGTT
AAGGCTTATAATGGTGAAGTTAAGGCAAAAGAAGCTTTTACAAGACAGAATAATAATTTACGTAATAGTGGTTTTAAGGC
CCAATGCTTATCTGGATTAATGATGCCAATCATGAGTTTTATTGGTAACTTTGGATACGTAGCAGTATGCATTATTGGCG
CTGCATTAGCAATGAGTGGAGATATATCATTTGGAGTAATTGTAGCATTTATGATGTATATTAGATATTTTACTCAGCCA
TTATCACAGTTAGCTCAAGCAGCTCAATCATTACAGTCAGCGGCTGCAGCAGGAGAGCGTGTATTTGAATTTTTAGAAGC
TCAAGAAATGGCTGATGAGAGTCATAAAGTAAAACGCTTGTCCAAAGCCAAAGGTGGAGTAGAATTTAGACATGTTCATT
TTGGTTATGATAGCAATAAGATTATTATTAATGATTTTTCTGCTCGTGCTGAACCTGGTCAAAAGATTGCTATTGTTGGG
CCAACTGGAGCTGGTAAAACAACGATAATCAACTTATTGATGCGTTTTTACGAAGTTGATCGTGGCGAAATTAGAATTGA
TAATATTCCAACTAAAGATTTACGTCGAGAAGATGTCCACGGACAATTCTGTATGGTTCTTCAAGATACGTGGCTTTTTG
AAGGAACAGTGCGTGAGAATTTGGTTTATAATACTAAAAATATATCTAATCAGATAATTGAAGAAGCATGTAAAGCAGTA
GGCTTAGATCATTTTATCAGAACACTTCCATATGGTTATGATACGGTACTTAATGATCAAGTAAATTTATCACAAGGACA
AAAACAACAGTTGACGATTGCTCGAGCGATGATTGCTGATAAACCAATGTTGATTCTTGATGAAGCTACTAGTTCAGTAG
ATACTAGAACAGAGTTACAGATTCAAAAGGCCATGGATGAATTAATGGAGGGACGAACTTCCTTTGTTATTGCGCATCGT
CTTTCAACAATTAAAAACGCAGATTTAATTCTAGTAATGAAAGATGGTGATATTATTGAAAGTGGAAATCATGAAGATTT
ATTAAGTCGTGGTGGTTTCTATGCAGAGCTTTATAATAGTCAGTTTGATAAAGCTGTATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(46-321)

ABC transporter (ABC_tran)

(384-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B0N1M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.894

94.554

0.538

Multiple sequence alignment