Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GII77_RS06445 Genome accession   NZ_CP045825
Coordinates   1235203..1236120 (+) Length   305 a.a.
NCBI ID   WP_015252359.1    Uniprot ID   -
Organism   Bacillus subtilis strain 75     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1230203..1241120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII77_RS06430 (GII77_06430) trpS 1230783..1231775 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  GII77_RS06435 (GII77_06435) oppA 1232519..1234156 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  GII77_RS06440 (GII77_06440) oppB 1234264..1235199 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  GII77_RS06445 (GII77_06445) amiD 1235203..1236120 (+) 918 WP_015252359.1 oligopeptide ABC transporter permease OppC Regulator
  GII77_RS06450 (GII77_06450) oppD 1236125..1237201 (+) 1077 WP_015252358.1 oligopeptide ABC transporter ATP-binding protein OppD -
  GII77_RS06455 (GII77_06455) oppF 1237203..1238120 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  GII77_RS06460 (GII77_06460) yjbB 1238227..1239444 (+) 1218 WP_080019554.1 MFS transporter -
  GII77_RS06465 (GII77_06465) yjbC 1239608..1240186 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  GII77_RS06470 (GII77_06470) spx 1240367..1240762 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33635.15 Da        Isoelectric Point: 10.2873

>NTDB_id=347845 GII77_RS06445 WP_015252359.1 1235203..1236120(+) (amiD) [Bacillus subtilis strain 75]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAILDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=347845 GII77_RS06445 WP_015252359.1 1235203..1236120(+) (amiD) [Bacillus subtilis strain 75]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGAGACATTTTCGTCCGTACATGGGTAGGGGCTCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTATTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment