Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GII78_RS06155 Genome accession   NZ_CP045824
Coordinates   1200695..1201612 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain MB8_B10     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1195695..1206612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII78_RS06140 (GII78_06140) trpS 1196275..1197267 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  GII78_RS06145 (GII78_06145) oppA 1198011..1199648 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  GII78_RS06150 (GII78_06150) oppB 1199756..1200691 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  GII78_RS06155 (GII78_06155) amiD 1200695..1201612 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  GII78_RS06160 (GII78_06160) oppD 1201617..1202693 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  GII78_RS06165 (GII78_06165) oppF 1202695..1203612 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  GII78_RS06170 (GII78_06170) yjbB 1203719..1204936 (+) 1218 WP_010886478.1 MFS transporter -
  GII78_RS06175 (GII78_06175) yjbC 1205100..1205678 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  GII78_RS06180 (GII78_06180) spx 1205859..1206254 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=347693 GII78_RS06155 WP_003232954.1 1200695..1201612(+) (amiD) [Bacillus subtilis strain MB8_B10]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=347693 GII78_RS06155 WP_003232954.1 1200695..1201612(+) (amiD) [Bacillus subtilis strain MB8_B10]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGTATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTCGATTTGCTGATCGGCGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAATATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTTTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364

Multiple sequence alignment