Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HDCHBGLK_RS11560 Genome accession   NZ_CP036170
Coordinates   2242844..2244658 (+) Length   604 a.a.
NCBI ID   WP_039909704.1    Uniprot ID   A0A494WS84
Organism   [Clostridium] scindens ATCC 35704     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2237844..2249658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HDCHBGLK_RS11535 (HDCHBGLK_02289) - 2238464..2238949 (+) 486 WP_004607024.1 HD domain-containing protein -
  HDCHBGLK_RS11540 (HDCHBGLK_02290) - 2238980..2239432 (+) 453 WP_009248112.1 GNAT family N-acetyltransferase -
  HDCHBGLK_RS11545 (HDCHBGLK_02291) dtd 2239433..2239879 (+) 447 WP_004607022.1 D-aminoacyl-tRNA deacylase -
  HDCHBGLK_RS11550 (HDCHBGLK_02292) - 2240083..2240586 (+) 504 WP_004607021.1 MarR family winged helix-turn-helix transcriptional regulator -
  HDCHBGLK_RS11555 (HDCHBGLK_02293) - 2240608..2242842 (+) 2235 WP_004607020.1 ABC transporter ATP-binding protein -
  HDCHBGLK_RS11560 (HDCHBGLK_02294) rcrQ 2242844..2244658 (+) 1815 WP_039909704.1 ABC transporter ATP-binding protein Regulator
  HDCHBGLK_RS11565 (HDCHBGLK_02295) - 2244671..2245282 (+) 612 WP_004607018.1 HD domain-containing protein -
  HDCHBGLK_RS11570 (HDCHBGLK_02296) - 2245357..2245617 (-) 261 WP_004607017.1 spore coat protein -
  HDCHBGLK_RS11575 (HDCHBGLK_02297) - 2245630..2245812 (-) 183 WP_004607016.1 hypothetical protein -
  HDCHBGLK_RS11580 (HDCHBGLK_02298) - 2245847..2246590 (-) 744 WP_004607015.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  HDCHBGLK_RS11585 (HDCHBGLK_02299) - 2246693..2247658 (+) 966 WP_004607014.1 dipeptidase -
  HDCHBGLK_RS11590 (HDCHBGLK_02300) - 2247728..2248954 (-) 1227 WP_004607013.1 argininosuccinate synthase -
  HDCHBGLK_RS11595 (HDCHBGLK_02301) - 2249255..2249593 (+) 339 WP_009248109.1 PadR family transcriptional regulator -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67212.82 Da        Isoelectric Point: 6.8322

>NTDB_id=347269 HDCHBGLK_RS11560 WP_039909704.1 2242844..2244658(+) (rcrQ) [[Clostridium] scindens ATCC 35704]
MPRRGPGHGPMPGEKAKDFKGTMKKLMGYMGKYKIALLFVVIFAIGSTVFNIIGPKILGKATTEIFTGLVGKISGGSGID
FAKIGRILATLLCLYLCSAFFSFIQGYIMTGVSQKLTYRMRREISEKISRLPMNYFDKLTHGESLSRITNDVDTLSMSLN
QSATQVITSVTTIIGVLIMMLSISPLMTVIALLILPVSMGLISVIVKRSQKFFKSQQRYLGHVNGQVEEVYGGHSIVKAF
NKEEDVIEAFDRDNEILYQSAWKSQFLSGMMMPIMQFVGNLGYVAVVILGGYLAIKKTIEVGDIQSFIQYVRSFTQPIQQ
VAQVANMLQSTAAASERVFEFLEEPEEDQTVPDAVALEGLEGRVEFDHVHFGYNPDHIIINDFSAKVEPGQKIAIVGPTG
AGKTTMVKLLMRFYDVNSGAIKVDGHDIRDFNRSELRQMFGMVLQDTWLFKGSIEDNIRYGKLDATHEEVVEAAKAAHVH
RFVQTLPGGYSMELNEEASNVSQGQKQLLTIARAILADPKILILDEATSSVDTRTEVRIQKAMDNLMRGRTSFIIAHRLS
TIRDADLILVMKDGDIVEQGTHEELLARNGFYEDLYNSQFERSA

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=347269 HDCHBGLK_RS11560 WP_039909704.1 2242844..2244658(+) (rcrQ) [[Clostridium] scindens ATCC 35704]
ATGCCAAGAAGAGGTCCAGGACATGGTCCGATGCCTGGGGAGAAGGCAAAGGACTTTAAAGGCACTATGAAAAAACTGAT
GGGTTATATGGGAAAATATAAGATCGCCCTGCTCTTTGTGGTCATATTTGCCATCGGCAGTACTGTATTTAATATTATAG
GCCCCAAGATTCTTGGAAAGGCGACCACGGAGATATTTACCGGCCTGGTAGGCAAGATATCCGGAGGAAGCGGAATTGAC
TTTGCAAAGATCGGAAGAATTCTGGCGACATTGCTCTGCCTGTACCTATGCAGCGCCTTCTTCTCGTTTATCCAGGGATA
CATCATGACAGGCGTGTCCCAGAAGCTGACCTACCGGATGAGAAGGGAGATCTCCGAGAAGATCAGCCGGCTGCCAATGA
ATTACTTTGATAAGCTGACCCACGGAGAGAGCCTGTCACGCATCACCAATGACGTGGATACCCTGAGCATGAGCTTGAAC
CAGAGCGCGACACAGGTAATCACCTCGGTGACGACGATCATCGGAGTGCTGATCATGATGCTCAGTATTAGCCCGCTGAT
GACGGTGATCGCCCTCTTGATCCTTCCGGTGTCCATGGGACTGATCTCTGTGATCGTCAAGCGCTCCCAGAAGTTCTTCA
AAAGCCAGCAGAGGTACCTGGGCCATGTCAATGGGCAGGTGGAAGAGGTGTACGGCGGACATAGCATCGTAAAGGCATTC
AACAAGGAGGAAGACGTGATCGAGGCATTTGACCGGGACAATGAGATCCTCTACCAGTCTGCATGGAAGTCCCAGTTCCT
CTCAGGAATGATGATGCCTATCATGCAGTTTGTTGGAAATCTTGGCTATGTGGCCGTAGTCATCCTTGGTGGCTACCTTG
CGATCAAGAAGACGATAGAAGTAGGCGACATCCAGTCATTTATCCAATATGTAAGAAGCTTTACCCAGCCGATCCAGCAG
GTAGCGCAGGTGGCAAACATGCTTCAGTCCACGGCAGCGGCTTCCGAGCGTGTATTCGAGTTCCTGGAAGAGCCGGAAGA
AGACCAGACGGTACCGGATGCAGTGGCTTTGGAAGGCCTGGAAGGGCGTGTGGAATTTGACCATGTGCATTTCGGATACA
ATCCGGATCATATCATTATCAATGATTTCAGCGCCAAGGTAGAGCCTGGGCAGAAGATTGCCATCGTTGGGCCTACCGGA
GCCGGCAAGACCACCATGGTCAAACTGCTGATGCGGTTCTATGACGTCAACAGCGGCGCCATCAAGGTAGACGGCCATGA
TATCCGTGACTTTAACCGCAGCGAGCTGCGCCAGATGTTCGGCATGGTACTGCAGGATACCTGGCTGTTTAAGGGGAGCA
TTGAAGACAATATCCGCTATGGCAAGCTGGACGCTACCCATGAAGAGGTGGTCGAAGCTGCCAAGGCTGCCCATGTACAC
CGTTTTGTACAGACGCTGCCGGGAGGCTATAGCATGGAGCTGAACGAAGAGGCAAGCAATGTGTCCCAGGGACAGAAGCA
GCTTCTGACTATTGCCAGGGCAATTCTGGCGGATCCGAAGATTCTGATCCTTGATGAGGCTACCAGTTCCGTAGATACCC
GTACGGAAGTCCGGATTCAGAAGGCGATGGATAATTTGATGCGTGGCAGGACCAGCTTCATTATTGCACACCGTCTCTCA
ACCATCCGAGACGCAGACCTGATTCTGGTCATGAAGGACGGAGACATCGTCGAGCAGGGGACTCATGAAGAACTGTTGGC
AAGAAACGGCTTCTATGAGGATCTTTATAACTCTCAGTTTGAAAGAAGCGCATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(381-529)

ABC transporter transmembrane region (ABC_membrane)

(37-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A494WS84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.602

96.192

0.487

Multiple sequence alignment