Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   EXW42_RS23540 Genome accession   NZ_CP036137
Coordinates   4633467..4633925 (+) Length   152 a.a.
NCBI ID   WP_002014827.1    Uniprot ID   J8I023
Organism   Bacillus mycoides strain JAS85/1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4628467..4638925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW42_RS23525 (EXW42_24090) - 4629131..4629367 (+) 237 WP_002014830.1 hypothetical protein -
  EXW42_RS23530 (EXW42_24095) - 4629534..4631642 (-) 2109 WP_215577323.1 RNA degradosome polyphosphate kinase -
  EXW42_RS23535 (EXW42_24100) - 4631751..4633325 (-) 1575 WP_003191081.1 Ppx/GppA family phosphatase -
  EXW42_RS23540 (EXW42_24105) kre 4633467..4633925 (+) 459 WP_002014827.1 YkyB family protein Regulator
  EXW42_RS23545 (EXW42_24110) - 4633958..4634620 (-) 663 WP_002014826.1 YkyA family protein -
  EXW42_RS23550 (EXW42_24115) - 4635171..4635824 (-) 654 WP_002033822.1 diguanylate cyclase domain-containing protein -
  EXW42_RS23555 (EXW42_24120) - 4635987..4636220 (+) 234 WP_002014824.1 phage holin -
  EXW42_RS23560 (EXW42_24125) - 4636252..4636752 (-) 501 WP_002033821.1 hypothetical protein -
  EXW42_RS23565 (EXW42_24130) - 4637305..4638846 (+) 1542 WP_002014821.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17753.46 Da        Isoelectric Point: 10.6793

>NTDB_id=347092 EXW42_RS23540 WP_002014827.1 4633467..4633925(+) (kre) [Bacillus mycoides strain JAS85/1]
MKPSQPQSPLHNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLITEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKDDFRTLPHLGHLESSYRNPKTTLSLTIAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=347092 EXW42_RS23540 WP_002014827.1 4633467..4633925(+) (kre) [Bacillus mycoides strain JAS85/1]
ATGAAACCTTCACAACCACAATCTCCATTGCATAATCAACATTCTATTAATAGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCTGCAACTAACCCTAAGTACTTATATTGGTTAAAAAAGACTGCTTTAGAACGCTTAATTACTGAAA
AAAAGGCTATCAAAGAAGGATTACATTTTTCTAGAAATCCACGTTTTAGTCAACAACAATCCGATGTTCTTATACGTTTA
GGTGATTATTTTTTCCATATCCCTCCTACGAAAGATGATTTTCGCACCCTACCGCATCTTGGTCACCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAATAGCAAAAAAAACACTTCAAGATTATATTGGTCCTGAAGCATTAAAAC
AGGAAAAAAAGTTAAGCGAACCAGTTCCATGGTATAGCCGTACCTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8I023

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

63.793

76.316

0.487

Multiple sequence alignment