Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SAVC_RS07870 Genome accession   NC_016912
Coordinates   1594268..1595542 (+) Length   424 a.a.
NCBI ID   WP_000102735.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus VC40     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1589268..1600542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAVC_RS07840 (SAVC_07355) mnmA 1589470..1590588 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  SAVC_RS07845 (SAVC_07360) - 1590589..1591731 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  SAVC_RS07850 (SAVC_07365) - 1592043..1593056 (+) 1014 WP_000985889.1 LLM class flavin-dependent oxidoreductase -
  SAVC_RS07855 (SAVC_07370) - 1593293..1593439 (-) 147 WP_000009238.1 SAS049 family protein -
  SAVC_RS07860 (SAVC_07375) - 1593479..1593661 (-) 183 WP_000752909.1 CsbD family protein -
  SAVC_RS07865 (SAVC_07380) cymR 1593761..1594183 (-) 423 WP_000704122.1 cysteine metabolism transcriptional regulator CymR -
  SAVC_RS07870 (SAVC_07385) rarA 1594268..1595542 (+) 1275 WP_000102735.1 replication-associated recombination protein A Machinery gene
  SAVC_RS07875 (SAVC_07390) - 1595703..1596476 (-) 774 WP_000682646.1 ThiF family adenylyltransferase -
  SAVC_RS07880 - 1596476..1596604 (-) 129 WP_001790559.1 hypothetical protein -
  SAVC_RS07885 (SAVC_07395) aspS 1596937..1598703 (-) 1767 WP_000044800.1 aspartate--tRNA ligase -
  SAVC_RS07890 (SAVC_07400) hisS 1598719..1599981 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47250.81 Da        Isoelectric Point: 8.3539

>NTDB_id=34696 SAVC_RS07870 WP_000102735.1 1594268..1595542(+) (rarA) [Staphylococcus aureus subsp. aureus VC40]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=34696 SAVC_RS07870 WP_000102735.1 1594268..1595542(+) (rarA) [Staphylococcus aureus subsp. aureus VC40]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGATGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGCCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGACAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAC
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684

Multiple sequence alignment