Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   GII83_RS08020 Genome accession   NZ_CP045818
Coordinates   1536386..1536835 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain MB9_B6     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1531386..1541835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII83_RS07980 (GII83_07980) ctaE 1531402..1532025 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  GII83_RS07985 (GII83_07985) ctaF 1532028..1532360 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  GII83_RS07990 (GII83_07990) ctaG 1532388..1533281 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  GII83_RS07995 (GII83_07995) ylbA 1533313..1533675 (-) 363 WP_003232238.1 YugN family protein -
  GII83_RS08000 (GII83_08000) ylbB 1533815..1534261 (+) 447 WP_029726520.1 CBS domain-containing protein -
  GII83_RS08005 (GII83_08005) ylbC 1534345..1535385 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  GII83_RS08010 (GII83_08010) ylbD 1535617..1536015 (+) 399 WP_003232233.1 YlbD family protein -
  GII83_RS08015 (GII83_08015) ylbE 1536031..1536270 (+) 240 WP_003232231.1 YlbE-like family protein -
  GII83_RS08020 (GII83_08020) ylbF 1536386..1536835 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  GII83_RS08025 (GII83_08025) ylbG 1536890..1537162 (+) 273 WP_024573211.1 YlbG family protein -
  GII83_RS08030 (GII83_08030) rsmD 1537485..1538039 (+) 555 WP_029726518.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GII83_RS08035 (GII83_08035) coaD 1538044..1538529 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  GII83_RS08040 (GII83_08040) spoVV 1538540..1539766 (-) 1227 WP_029726517.1 dipicolinic acid transporter SpoVV -
  GII83_RS08045 (GII83_08045) ylbK 1539947..1540729 (+) 783 WP_003232221.1 patatin family protein -
  GII83_RS08050 (GII83_08050) sepM 1540731..1541756 (+) 1026 WP_029726516.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=346940 GII83_RS08020 WP_003221370.1 1536386..1536835(+) (ylbF) [Bacillus subtilis strain MB9_B6]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=346940 GII83_RS08020 WP_003221370.1 1536386..1536835(+) (ylbF) [Bacillus subtilis strain MB9_B6]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment