Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EXW25_RS22160 Genome accession   NZ_CP036111
Coordinates   4342343..4344679 (-) Length   778 a.a.
NCBI ID   WP_097952887.1    Uniprot ID   -
Organism   Bacillus toyonensis strain JAS411     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4337343..4349679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW25_RS22135 (EXW25_22585) - 4340001..4340345 (+) 345 WP_000209543.1 PH domain-containing protein -
  EXW25_RS22140 (EXW25_22590) - 4340388..4341455 (-) 1068 WP_000793112.1 AI-2E family transporter -
  EXW25_RS22145 (EXW25_22595) - 4341632..4341844 (+) 213 WP_000242555.1 hypothetical protein -
  EXW25_RS22150 (EXW25_22600) - 4341880..4342008 (-) 129 WP_001053553.1 YrzQ family protein -
  EXW25_RS22155 (EXW25_22605) - 4342027..4342215 (-) 189 WP_000469281.1 hypothetical protein -
  EXW25_RS22160 (EXW25_22610) recD2 4342343..4344679 (-) 2337 WP_097952887.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EXW25_RS22165 (EXW25_22615) - 4344787..4345446 (-) 660 WP_000066402.1 tetratricopeptide repeat protein -
  EXW25_RS22170 (EXW25_22620) mnmA 4345557..4346672 (-) 1116 WP_001038014.1 tRNA 2-thiouridine(34) synthase MnmA -
  EXW25_RS22175 (EXW25_22625) - 4346689..4347834 (-) 1146 WP_097952885.1 cysteine desulfurase family protein -
  EXW25_RS22180 (EXW25_22630) - 4347870..4348286 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87286.88 Da        Isoelectric Point: 5.2613

>NTDB_id=346892 EXW25_RS22160 WP_097952887.1 4342343..4344679(-) (recD2) [Bacillus toyonensis strain JAS411]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKIIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKDQLVRETMSLLNNQEGRVTEEDIIGCVEMMQSEGKVIIEGERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEMLKTLGEIEEQLKVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGVSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAIPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCAGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=346892 EXW25_RS22160 WP_097952887.1 4342343..4344679(-) (recD2) [Bacillus toyonensis strain JAS411]
ATGGGAAATCAACATGCCATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAATCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCACTTTAAAGACCACCCGAAGTATGGG
AAACAATATTTAGTTGAAACGTTTAAGAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACGGCTGAAAAAATCGTAGATCACCTTGGTGAGCATGCCATTTCTAAAATTATGGATG
ATCCTGATGCGTTAAATGGTGTTGTTAACAAACAAAAAGCACAGGAAATATATGAGACAATTGTGGAGCATCAAGGGTTA
GAGAAAGTAATGAGCTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAAATTTATCAGCAATATAAAGAAAT
GACATTAGAAGTGATTCGTAATAATCCATATCAACTTATTGAAGAAGTGGACGGGATTGGTTTTGGACGAGCAGATGATA
TAGGACGTGCGTTAGGTATATCGGGTAATCATGATGACCGTGTACGTGCGGGATGTTTTTATACGTTAGAGAATGTTTCA
CTGCAGCTCGGCCACGTTTATATGGGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGTAG
AGTGACTGAGGAAGACATTATAGGCTGTGTTGAAATGATGCAAAGTGAAGGGAAAGTCATCATTGAAGGAGAACGAGTGT
ACTTAGCATCGTTATTTTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGTAGGCTTATGAATCAAGAGGAAACCCCTTCA
TTTCCTGAAGCAGAAATGTTAAAAACATTAGGTGAAATTGAAGAACAGCTGAAGGTGCAGTATGCACCGTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAGCCGATGATGTTATTGACAGGTGGACCAGGAACGGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTACGCGTCCTTGCATGGGGTATCATTAAATCCGAATGAATACAGTGATGATAATCCATTTCCAATA
TTATTAACGGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCTACCGGGCTCCCTGCTTGTACAATTCATCGTCT
GCTTGGTTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACCGATCCAGTTCAAGGGAAGTTACTCATTATTGATGAGT
TTTCGATGGTAGATATTTGGCTTGCAAATCAGCTATTCAAGTCACTTCCGACAAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTGTTAAAAGATTTATTAAATGCAGGAGCCATTCCAACGGTAAAACT
TACAGAAATTTATCGTCAGGCGGAAGGTTCGTCTGTTATTCAGCTTGCCCATGCGATAAAAGACGGAACACTTCCACCGG
ATTTAGCGCAAAATAAAAAAGATCGTTCATTTATCAGCTGTGCAGGGGCTCAAATTGTTGAAGTTGTAAAAAAAGTATGT
GAAAACGCGAAGACGAAAGGGTTTAGCGCAAGAGATGTCCAAGTGTTGGCACCTATGTACCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTTCAAGAAGTGTTTAATCCGAAAAAAGAAAAAAGTAAAGAAATTGCCTACGGTGACGTTGTGT
ATCGAAGAGGTGATAAAGTACTTCAATTAGTCAATCAGCCGGAAAGCCAAGTATTCAATGGTGATATTGGAGAAATTGTT
TCGGTGTTTTATGCAAAAGAAAATGTTGAGCAACAGGACATGATTATCGTTTCATTTGATGGAATCGAAGTAACGTATAC
AAAGCCGGATTTAAATCAAATTACCCATGCATATTGCTGCTCGATTCATAAATCACAAGGTAGTGAATTTCCAATAGTTA
TTATGCCGATTGTAAAGAGCTACTACCGTATGTTACGTCGTAATTTAATTTACACGGGCATTACAAGAAGTAAGAAATTC
CTTATTATTTGTGGGGAGGAAGCGGCTTTTCAATCCGGTGTAAATCGCCTTGACGATGCAATGCGTCAAACGACTTTAGC
TGGTCGTTTGCAAGAATCGCAAGGAGAGGTGCAGATGGTAACGGTTAATGGCGAGGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.269

100

0.582

Multiple sequence alignment