Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EXW48_RS22715 Genome accession   NZ_CP036101
Coordinates   4464531..4466867 (-) Length   778 a.a.
NCBI ID   WP_046958828.1    Uniprot ID   A0A1C4G1Y6
Organism   Bacillus wiedmannii strain JAS28/2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4459531..4471867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW48_RS22685 (EXW48_23015) tnpB 4460803..4461924 (-) 1122 WP_215562146.1 IS200/IS605 family element RNA-guided endonuclease TnpB -
  EXW48_RS22690 (EXW48_23020) - 4462193..4462537 (+) 345 WP_046958829.1 PH domain-containing protein -
  EXW48_RS22695 (EXW48_23025) - 4462576..4463643 (-) 1068 WP_000793124.1 AI-2E family transporter -
  EXW48_RS22700 (EXW48_23030) - 4463820..4464032 (+) 213 WP_000242555.1 hypothetical protein -
  EXW48_RS22705 (EXW48_23035) - 4464068..4464196 (-) 129 WP_001053553.1 YrzQ family protein -
  EXW48_RS22710 (EXW48_23040) - 4464215..4464403 (-) 189 WP_000469281.1 hypothetical protein -
  EXW48_RS22715 (EXW48_23045) recD2 4464531..4466867 (-) 2337 WP_046958828.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EXW48_RS22720 (EXW48_23050) - 4466964..4467623 (-) 660 WP_215562147.1 tetratricopeptide repeat protein -
  EXW48_RS22725 (EXW48_23055) mnmA 4467734..4468849 (-) 1116 WP_001038022.1 tRNA 2-thiouridine(34) synthase MnmA -
  EXW48_RS22730 (EXW48_23060) - 4468866..4470011 (-) 1146 WP_060488233.1 cysteine desulfurase family protein -
  EXW48_RS22735 (EXW48_23065) - 4470047..4470463 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87317.80 Da        Isoelectric Point: 5.3238

>NTDB_id=346792 EXW48_RS22715 WP_046958828.1 4464531..4466867(-) (recD2) [Bacillus wiedmannii strain JAS28/2]
MGNQHAMDLFEEDKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKNQLVRETMSLLNNQEGRVTEEDIVACVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGQIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLANRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=346792 EXW48_RS22715 WP_046958828.1 4464531..4466867(-) (recD2) [Bacillus wiedmannii strain JAS28/2]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGATAAAAAGTTTATAAAAGCGCAAGTTCTTCACACCATTTTCCA
CAACGAAGAAAACCTCTATTCGGTTGTCAGTATGAAAGTCATTGAGACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGGCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACATTTAAGAAAGAATTGCCGCAAACAAAAGCTGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGATCATCTTGGGGAACATGCCATCTCTAAAATTATGGATG
ATCCGGATGCGTTAAATGGTGTTGTCAATAAGCAAAAAGCTCAAGAAATATATGAGACAATTGTTGAACATCAAGGACTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAGCTTATTGAAGAAGTGGACGGGATTGGATTTGGAAGAGCGGATGATA
TAGGACGTGCGTTAGGTATATCGGGTAATCATGATGACCGTGTACGTGCGGGTTGTTTTTATACGTTAGAGAATGTTTCA
TTGCAACTTGGTCATGTTTATATGGGGAAAAATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACCGAGGAAGACATTGTAGCTTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTTATCATAGAAGAAGAACGAGTGT
ATTTAGCATCGTTATTCTACTCAGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAATCAGGAGGAAACACCTTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTCAAATTGAAGAACAACTGAATGTACAGTATGCACCGTTTCAGCAAGA
AGCGATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGCCTATCGTTAAATCCGAATGAATACAGTGACGATAATCCATTTCCGATA
TTATTAACGGCCCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACCCCTGAAGGGTCTTTCCAGCGTAATGAAACGGATCCGGTACAAGGGAAATTGCTTATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAATCATTGCCGACTAACATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAATTACCATCTGTAGGACCTGGACAAGTGTTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTGAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCTGTTATTCAACTCGCCCATGCGATAAAAAATGGAACGCTCCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAAAATGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTACTGGCCCCGATGTATCGTGGCCCTGCCGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTACTGCAACTCGTTAATCAACCGGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAGAACGTTGAACAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACGTATAC
AAAGCCAGACTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAATCGCAAGGTAGTGAGTTTCCGATTGTGA
TTATGCCGATAGTGAAAAGTTACAATCGTATGTTACGTCGTAATTTAATTTACACTGGTATTACAAGAAGTAAAAAGTTC
CTCATTATTTGCGGGGAGGAAGCAGCTTTCCAATCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
GAATCGTTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4G1Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577

Multiple sequence alignment