Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EXW48_RS19850 Genome accession   NZ_CP036101
Coordinates   3939056..3939835 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus wiedmannii strain JAS28/2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3934056..3944835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW48_RS19825 (EXW48_20100) uppS 3934800..3935576 (-) 777 WP_000971311.1 isoprenyl transferase -
  EXW48_RS19830 (EXW48_20105) frr 3935662..3936219 (-) 558 WP_000531506.1 ribosome recycling factor -
  EXW48_RS19835 (EXW48_20110) pyrH 3936222..3936944 (-) 723 WP_000042667.1 UMP kinase -
  EXW48_RS19840 (EXW48_20115) tsf 3937011..3937898 (-) 888 WP_001018585.1 translation elongation factor Ts -
  EXW48_RS19845 (EXW48_20120) rpsB 3938002..3938703 (-) 702 WP_000111484.1 30S ribosomal protein S2 -
  EXW48_RS19850 (EXW48_20125) codY 3939056..3939835 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EXW48_RS19855 (EXW48_20130) hslU 3939913..3941304 (-) 1392 WP_000550070.1 ATP-dependent protease ATPase subunit HslU -
  EXW48_RS19860 (EXW48_20135) hslV 3941327..3941869 (-) 543 WP_000526271.1 ATP-dependent protease proteolytic subunit HslV -
  EXW48_RS19865 (EXW48_20140) xerC 3941913..3942812 (-) 900 WP_001101235.1 tyrosine recombinase XerC -
  EXW48_RS19870 (EXW48_20145) trmFO 3942878..3944182 (-) 1305 WP_000211996.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=346785 EXW48_RS19850 WP_000421290.1 3939056..3939835(-) (codY) [Bacillus wiedmannii strain JAS28/2]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=346785 EXW48_RS19850 WP_000421290.1 3939056..3939835(-) (codY) [Bacillus wiedmannii strain JAS28/2]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCGGAAGAATACACGCAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGCACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTTCGTAAATTAGAGAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459

Multiple sequence alignment