Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SSUBM407_RS04140 Genome accession   NC_012926
Coordinates   852538..853377 (+) Length   279 a.a.
NCBI ID   WP_012028260.1    Uniprot ID   A0A2K1T148
Organism   Streptococcus suis BM407     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 847538..858377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUBM407_RS04110 (SSUBM407_0771) - 848175..849053 (+) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -
  SSUBM407_RS04115 (SSUBM407_0772) atpD 849073..850479 (+) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  SSUBM407_RS04120 (SSUBM407_0773) - 850489..850905 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  SSUBM407_RS04125 (SSUBM407_0774) - 850965..851189 (+) 225 WP_012775178.1 DUF1146 family protein -
  SSUBM407_RS04130 (SSUBM407_0775) murA 851213..852324 (+) 1112 Protein_771 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SSUBM407_RS04135 (SSUBM407_0776) - 852317..852508 (+) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  SSUBM407_RS04140 (SSUBM407_0777) endA 852538..853377 (+) 840 WP_012028260.1 DNA/RNA non-specific endonuclease Machinery gene
  SSUBM407_RS04145 (SSUBM407_0778) - 853564..855117 (+) 1554 WP_012775580.1 MFS transporter -
  SSUBM407_RS04150 (SSUBM407_0779) - 855173..856201 (+) 1029 WP_012775175.1 sugar kinase -
  SSUBM407_RS04155 (SSUBM407_0780) uidA 856217..858016 (+) 1800 WP_012775174.1 beta-glucuronidase -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30190.37 Da        Isoelectric Point: 6.2370

>NTDB_id=34671 SSUBM407_RS04140 WP_012028260.1 852538..853377(+) (endA) [Streptococcus suis BM407]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPNQELASSVLTEDVKKQLGNSIEWNSA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=34671 SSUBM407_RS04140 WP_012028260.1 852538..853377(+) (endA) [Streptococcus suis BM407]
ATGGCGAAGAAAAATGTAAAAAAACAAGCAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGTAGCAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAATCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGAAATTCGATTGAATGGAATAGTGCT
GGAGCGTTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCGGGTTGGCATCAGATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGTCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K1T148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.492

84.588

0.588
  endA Streptococcus pneumoniae D39

69.492

84.588

0.588
  endA Streptococcus pneumoniae R6

69.492

84.588

0.588
  endA Streptococcus pneumoniae TIGR4

69.492

84.588

0.588

Multiple sequence alignment