Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   GII86_RS14560 Genome accession   NZ_CP045816
Coordinates   2691831..2692835 (-) Length   334 a.a.
NCBI ID   WP_003229718.1    Uniprot ID   O32055
Organism   Bacillus subtilis strain P5_B2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2686831..2697835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII86_RS14530 (GII86_14530) yrbG 2687805..2688461 (-) 657 WP_014480436.1 DUF421 domain-containing protein -
  GII86_RS14535 (GII86_14535) - 2688659..2689048 (+) 390 WP_014477528.1 TIGR04086 family membrane protein -
  GII86_RS14540 (GII86_14540) yajC 2689105..2689371 (-) 267 WP_004398708.1 preprotein translocase subunit YajC -
  GII86_RS14545 (GII86_14545) tgt 2689408..2690553 (-) 1146 WP_003229725.1 tRNA guanosine(34) transglycosylase Tgt -
  GII86_RS14550 (GII86_14550) queA 2690580..2691608 (-) 1029 WP_003229723.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  GII86_RS14555 (GII86_14555) yrzS 2691638..2691838 (-) 201 WP_003222669.1 DUF2905 domain-containing protein -
  GII86_RS14560 (GII86_14560) ruvB 2691831..2692835 (-) 1005 WP_003229718.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  GII86_RS14565 (GII86_14565) ruvA 2692846..2693451 (-) 606 WP_003229717.1 Holliday junction branch migration protein RuvA Machinery gene
  GII86_RS14570 (GII86_14570) bofC 2693590..2694102 (-) 513 WP_003229715.1 sporulation cell-cell signaling protein BofC -
  GII86_RS14575 (GII86_14575) csbX 2694150..2695457 (-) 1308 WP_153952973.1 MFS transporter -
  GII86_RS14580 (GII86_14580) iolG 2695528..2696556 (-) 1029 WP_015251559.1 inositol 2-dehydrogenase -
  GII86_RS14585 (GII86_14585) yrzF 2696794..2697441 (+) 648 WP_015251558.1 phosphotransferase -
  GII86_RS14590 (GII86_14590) - 2697487..2697609 (-) 123 WP_003229707.1 hypothetical protein -
  GII86_RS22260 - 2697694..2697768 (+) 75 Protein_2867 hypothetical protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 37467.78 Da        Isoelectric Point: 5.1631

>NTDB_id=346685 GII86_RS14560 WP_003229718.1 2691831..2692835(-) (ruvB) [Bacillus subtilis strain P5_B2]
MDERLVSSEADNHESVIEQSLRPQNLAQYIGQHKVKENLRVFIDAAKMRQETLDHVLLYGPPGLGKTTLASIVANEMGVE
LRTTSGPAIERPGDLAAILTALEPGDVLFIDEIHRLHRSIEEVLYPAMEDFCLDIVIGKGPSARSVRLDLPPFTLVGATT
RVGLLTAPLRDRFGVMSRLEYYTQEELADIVTRTADVFEVEIDKPSALEIARRSRGTPRVANRLLRRVRDFAQVLGDSRI
TEDISQNALERLQVDRLGLDHIDHKLLMGMIEKFNGGPVGLDTISATIGEESHTIEDVYEPYLLQIGFIQRTPRGRIVTP
AVYHHFQMEAPRYD

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=346685 GII86_RS14560 WP_003229718.1 2691831..2692835(-) (ruvB) [Bacillus subtilis strain P5_B2]
ATGGATGAACGGCTCGTCTCAAGTGAAGCAGACAACCATGAATCAGTGATAGAGCAAAGCCTGAGGCCGCAAAATCTGGC
ACAGTATATCGGGCAGCATAAGGTAAAAGAAAATTTGCGCGTGTTTATAGATGCGGCGAAAATGAGACAGGAGACGCTGG
ATCATGTTCTTCTGTACGGGCCGCCCGGACTCGGAAAAACAACGCTTGCTTCGATTGTTGCTAATGAAATGGGAGTGGAA
TTGCGGACGACATCAGGGCCTGCGATTGAAAGGCCTGGTGATTTGGCTGCTATATTAACGGCGCTGGAACCGGGAGATGT
ATTATTTATTGATGAAATACATAGGCTGCACAGATCGATCGAAGAGGTGCTTTATCCTGCAATGGAAGACTTTTGCCTGG
ACATTGTGATTGGCAAAGGCCCATCTGCCCGCTCGGTTCGCCTCGACCTTCCGCCTTTTACGCTGGTGGGAGCCACGACG
AGGGTGGGGCTTTTGACGGCTCCTTTAAGAGACAGATTCGGCGTAATGTCTCGCCTTGAGTACTATACACAAGAAGAACT
GGCGGATATTGTCACAAGAACCGCTGATGTATTCGAGGTTGAGATTGATAAACCGTCGGCTCTTGAAATTGCAAGAAGAT
CGAGAGGGACGCCCCGCGTGGCGAACCGCCTGCTGAGAAGGGTGCGCGATTTCGCCCAAGTGCTGGGTGACAGCAGGATT
ACGGAAGACATTTCTCAGAATGCGCTGGAGCGGCTTCAGGTTGACCGCCTCGGTTTGGATCATATTGATCATAAGCTGCT
GATGGGCATGATCGAAAAATTCAACGGCGGCCCAGTAGGCCTTGATACGATTTCAGCTACCATCGGCGAGGAATCGCATA
CGATTGAAGACGTATATGAACCATATCTGCTGCAAATTGGATTTATACAAAGAACGCCGCGTGGAAGGATCGTGACACCG
GCCGTTTATCATCATTTCCAAATGGAGGCTCCCCGATATGACTGA

Domains

Predicted by InterProScan.

RuvB AAA lid domain (AAA_lid_4)

(182-255)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB C-terminal winged helix domain (WHD_RuvB)

(257-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O32055

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ruvB Streptococcus pneumoniae TIGR4

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae R6

60.429

97.605

0.59
  ruvB Streptococcus pneumoniae D39

60.429

97.605

0.59
  ruvB Synechocystis sp. PCC 6803

57.143

98.503

0.563
  ruvB Helicobacter pylori 26695

52.744

98.204

0.518

Multiple sequence alignment