Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   GII86_RS06375 Genome accession   NZ_CP045816
Coordinates   1231304..1232221 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain P5_B2     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1226304..1237221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII86_RS06360 (GII86_06360) trpS 1226885..1227877 (-) 993 WP_046160356.1 tryptophan--tRNA ligase -
  GII86_RS06365 (GII86_06365) oppA 1228621..1230258 (+) 1638 WP_021479550.1 oligopeptide ABC transporter substrate-binding protein OppA -
  GII86_RS06370 (GII86_06370) oppB 1230365..1231300 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  GII86_RS06375 (GII86_06375) amiD 1231304..1232221 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  GII86_RS06380 (GII86_06380) oppD 1232226..1233302 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  GII86_RS06385 (GII86_06385) oppF 1233304..1234221 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  GII86_RS06390 (GII86_06390) yjbB 1234328..1235545 (+) 1218 WP_080019554.1 MFS transporter -
  GII86_RS06395 (GII86_06395) yjbC 1235709..1236287 (+) 579 WP_003244921.1 GNAT family N-acetyltransferase -
  GII86_RS06400 (GII86_06400) spx 1236468..1236863 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=346624 GII86_RS06375 WP_003232954.1 1231304..1232221(+) (amiD) [Bacillus subtilis strain P5_B2]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=346624 GII86_RS06375 WP_003232954.1 1231304..1232221(+) (amiD) [Bacillus subtilis strain P5_B2]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364