Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   EXW46_RS26235 Genome accession   NZ_CP036085
Coordinates   5112882..5113484 (+) Length   200 a.a.
NCBI ID   WP_105583987.1    Uniprot ID   -
Organism   Bacillus mycoides strain JAS12/5     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5107882..5118484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW46_RS26200 (EXW46_26820) - 5108199..5108753 (-) 555 WP_002030808.1 DUF1273 domain-containing protein -
  EXW46_RS26205 (EXW46_26825) - 5108810..5109247 (-) 438 WP_002189016.1 CotD family spore coat protein -
  EXW46_RS26210 (EXW46_26830) - 5109404..5109994 (-) 591 WP_113733895.1 YppG family protein -
  EXW46_RS26215 (EXW46_26835) - 5110172..5110363 (+) 192 WP_002030817.1 YppF family protein -
  EXW46_RS26220 (EXW46_26840) - 5110542..5110886 (-) 345 WP_002011864.1 YppE family protein -
  EXW46_RS26225 (EXW46_26845) - 5110902..5111144 (-) 243 WP_002011865.1 hypothetical protein -
  EXW46_RS28675 - 5111263..5111409 (+) 147 WP_307838389.1 phage portal protein -
  EXW46_RS26230 (EXW46_26850) - 5111753..5112778 (-) 1026 WP_131245985.1 DUF2515 domain-containing protein -
  EXW46_RS26235 (EXW46_26855) recU 5112882..5113484 (+) 603 WP_105583987.1 Holliday junction resolvase RecU Machinery gene
  EXW46_RS26240 (EXW46_26860) - 5113551..5116292 (+) 2742 WP_215576914.1 penicillin-binding protein 1A -
  EXW46_RS26245 (EXW46_26865) - 5116319..5116837 (-) 519 WP_131245987.1 YpoC family protein -
  EXW46_RS26250 (EXW46_26870) nth 5116841..5117488 (-) 648 WP_000933020.1 endonuclease III -
  EXW46_RS26255 (EXW46_26875) dnaD 5117504..5118211 (-) 708 WP_000728546.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23331.59 Da        Isoelectric Point: 9.5601

>NTDB_id=346607 EXW46_RS26235 WP_105583987.1 5112882..5113484(+) (recU) [Bacillus mycoides strain JAS12/5]
MTIRYPNGKRYDQASQPHKTPIKKHTYSNRGMSLEEELNDTNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKQEIEEHGALLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=346607 EXW46_RS26235 WP_105583987.1 5112882..5113484(+) (recU) [Bacillus mycoides strain JAS12/5]
ATGACCATTCGTTACCCAAATGGAAAAAGGTACGATCAAGCTTCACAACCTCATAAAACACCAATAAAAAAACATACTTA
CAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGACACCAATCAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTC
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACTAAAAATAA
AACCAGTTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAGTCGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGTAAATCGATTACAAAACAAGAAATAGAAGAGCATGGGGCTTTATTATCATGCGGTTATCACCCTCG
AATTGATTATATCCGCGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.625

Multiple sequence alignment