Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | EXW46_RS15375 | Genome accession | NZ_CP036085 |
| Coordinates | 2953965..2954744 (+) | Length | 259 a.a. |
| NCBI ID | WP_002014541.1 | Uniprot ID | - |
| Organism | Bacillus mycoides strain JAS12/5 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2914592..2976987 | 2953965..2954744 | within | 0 |
Gene organization within MGE regions
Location: 2914592..2976987
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXW46_RS15185 (EXW46_15470) | rsmB | 2915152..2916486 (+) | 1335 | WP_002128834.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| EXW46_RS15190 (EXW46_15475) | rlmN | 2916491..2917579 (+) | 1089 | WP_002014500.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| EXW46_RS15195 (EXW46_15480) | - | 2917584..2918336 (+) | 753 | WP_002066780.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| EXW46_RS15200 (EXW46_15485) | pknB | 2918345..2920318 (+) | 1974 | WP_060749559.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| EXW46_RS15205 (EXW46_15490) | rsgA | 2920589..2921470 (+) | 882 | WP_002014503.1 | ribosome small subunit-dependent GTPase A | - |
| EXW46_RS15210 (EXW46_15495) | rpe | 2921473..2922117 (+) | 645 | WP_002014505.1 | ribulose-phosphate 3-epimerase | - |
| EXW46_RS15215 (EXW46_15500) | - | 2922218..2922898 (+) | 681 | WP_002014506.1 | thiamine diphosphokinase | - |
| EXW46_RS15220 (EXW46_15505) | spoVM | 2922965..2923045 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| EXW46_RS15225 (EXW46_15510) | rpmB | 2923119..2923307 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| EXW46_RS15230 (EXW46_15515) | - | 2923686..2924048 (+) | 363 | WP_002014507.1 | Asp23/Gls24 family envelope stress response protein | - |
| EXW46_RS15235 (EXW46_15520) | - | 2924071..2925747 (+) | 1677 | WP_002066784.1 | DAK2 domain-containing protein | - |
| EXW46_RS15240 (EXW46_15530) | recG | 2926172..2928220 (+) | 2049 | WP_002014510.1 | ATP-dependent DNA helicase RecG | - |
| EXW46_RS15245 (EXW46_15535) | fapR | 2928309..2928902 (+) | 594 | WP_000747354.1 | transcription factor FapR | - |
| EXW46_RS15250 (EXW46_15540) | plsX | 2928899..2929891 (+) | 993 | WP_002128828.1 | phosphate acyltransferase PlsX | - |
| EXW46_RS15255 (EXW46_15545) | fabD | 2929906..2930850 (+) | 945 | WP_131246420.1 | ACP S-malonyltransferase | - |
| EXW46_RS15260 (EXW46_15550) | fabG | 2930850..2931590 (+) | 741 | WP_002014514.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| EXW46_RS15265 (EXW46_15555) | acpP | 2931660..2931893 (+) | 234 | WP_002014515.1 | acyl carrier protein | - |
| EXW46_RS15270 (EXW46_15560) | rncS | 2931952..2932689 (+) | 738 | WP_002033792.1 | ribonuclease III | - |
| EXW46_RS15275 (EXW46_15565) | smc | 2932838..2936407 (+) | 3570 | WP_131246421.1 | chromosome segregation protein SMC | - |
| EXW46_RS15280 (EXW46_15570) | ftsY | 2936422..2937411 (+) | 990 | WP_002088200.1 | signal recognition particle-docking protein FtsY | - |
| EXW46_RS15285 (EXW46_15575) | - | 2937544..2937876 (+) | 333 | WP_000891061.1 | putative DNA-binding protein | - |
| EXW46_RS15290 (EXW46_15580) | ffh | 2937889..2939238 (+) | 1350 | WP_215576529.1 | signal recognition particle protein | - |
| EXW46_RS15295 (EXW46_15585) | rpsP | 2939339..2939611 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| EXW46_RS15300 (EXW46_15590) | - | 2939626..2939853 (+) | 228 | WP_002088196.1 | KH domain-containing protein | - |
| EXW46_RS15305 (EXW46_15595) | rimM | 2939975..2940490 (+) | 516 | WP_002014521.1 | ribosome maturation factor RimM | - |
| EXW46_RS15310 (EXW46_15600) | trmD | 2940490..2941224 (+) | 735 | WP_002014522.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| EXW46_RS15315 (EXW46_15605) | rplS | 2941371..2941715 (+) | 345 | WP_002014524.1 | 50S ribosomal protein L19 | - |
| EXW46_RS15320 (EXW46_15610) | lepB | 2941816..2942367 (+) | 552 | WP_002066791.1 | signal peptidase I | - |
| EXW46_RS15325 (EXW46_15615) | ylqF | 2942388..2943278 (+) | 891 | WP_002128821.1 | ribosome biogenesis GTPase YlqF | - |
| EXW46_RS15330 (EXW46_15620) | - | 2943334..2944107 (+) | 774 | WP_002014527.1 | ribonuclease HII | - |
| EXW46_RS15335 (EXW46_15625) | sucC | 2944301..2945461 (+) | 1161 | WP_002014529.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| EXW46_RS15340 (EXW46_15630) | sucD | 2945481..2946383 (+) | 903 | WP_000115186.1 | succinate--CoA ligase subunit alpha | - |
| EXW46_RS15345 (EXW46_15635) | dprA | 2946472..2947341 (+) | 870 | WP_002014531.1 | DNA-processing protein DprA | - |
| EXW46_RS15350 (EXW46_15640) | topA | 2947486..2949564 (+) | 2079 | WP_002088184.1 | type I DNA topoisomerase | - |
| EXW46_RS15355 (EXW46_15645) | trmFO | 2949613..2950917 (+) | 1305 | WP_002014534.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| EXW46_RS15360 (EXW46_15650) | xerC | 2950989..2951888 (+) | 900 | WP_078175468.1 | tyrosine recombinase XerC | - |
| EXW46_RS15365 (EXW46_15655) | hslV | 2951931..2952473 (+) | 543 | WP_002014538.1 | ATP-dependent protease proteolytic subunit HslV | - |
| EXW46_RS15370 (EXW46_15660) | hslU | 2952496..2953887 (+) | 1392 | WP_002014539.1 | ATP-dependent protease ATPase subunit HslU | - |
| EXW46_RS15375 (EXW46_15665) | codY | 2953965..2954744 (+) | 780 | WP_002014541.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| EXW46_RS15380 (EXW46_15670) | rpsB | 2955099..2955800 (+) | 702 | WP_002088178.1 | 30S ribosomal protein S2 | - |
| EXW46_RS15385 (EXW46_15675) | tsf | 2955904..2956791 (+) | 888 | WP_002088177.1 | translation elongation factor Ts | - |
| EXW46_RS15390 (EXW46_15680) | pyrH | 2956858..2957580 (+) | 723 | WP_002014544.1 | UMP kinase | - |
| EXW46_RS15395 (EXW46_15685) | frr | 2957584..2958141 (+) | 558 | WP_000531506.1 | ribosome recycling factor | - |
| EXW46_RS15400 (EXW46_15690) | - | 2958227..2959003 (+) | 777 | WP_002014545.1 | isoprenyl transferase | - |
| EXW46_RS15405 (EXW46_15695) | cdsA | 2959021..2959812 (+) | 792 | WP_215576528.1 | phosphatidate cytidylyltransferase | - |
| EXW46_RS15410 (EXW46_15700) | dxr | 2959836..2960978 (+) | 1143 | WP_002014547.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| EXW46_RS15415 (EXW46_15705) | rseP | 2960996..2962252 (+) | 1257 | WP_002088169.1 | RIP metalloprotease RseP | - |
| EXW46_RS15420 (EXW46_15710) | - | 2962362..2964062 (+) | 1701 | WP_078175371.1 | proline--tRNA ligase | - |
| EXW46_RS15425 (EXW46_15715) | - | 2964187..2968488 (+) | 4302 | WP_131246423.1 | PolC-type DNA polymerase III | - |
| EXW46_RS15430 (EXW46_15720) | rimP | 2968822..2969292 (+) | 471 | WP_002146103.1 | ribosome maturation factor RimP | - |
| EXW46_RS15435 (EXW46_15725) | nusA | 2969310..2970416 (+) | 1107 | WP_002014554.1 | transcription termination factor NusA | - |
| EXW46_RS15440 (EXW46_15730) | rnpM | 2970428..2970700 (+) | 273 | WP_002088161.1 | RNase P modulator RnpM | - |
| EXW46_RS15445 (EXW46_15735) | - | 2970701..2971012 (+) | 312 | WP_002111365.1 | YlxQ family RNA-binding protein | - |
| EXW46_RS15450 (EXW46_15740) | infB | 2971017..2973083 (+) | 2067 | WP_002014558.1 | translation initiation factor IF-2 | - |
| EXW46_RS15455 (EXW46_15745) | - | 2973080..2973361 (+) | 282 | WP_002088157.1 | DUF503 domain-containing protein | - |
| EXW46_RS15460 (EXW46_15750) | rbfA | 2973377..2973733 (+) | 357 | WP_000776437.1 | 30S ribosome-binding factor RbfA | - |
| EXW46_RS15465 (EXW46_15755) | truB | 2973824..2974747 (+) | 924 | WP_002033681.1 | tRNA pseudouridine(55) synthase TruB | - |
| EXW46_RS15470 (EXW46_15760) | ribF | 2974791..2975762 (+) | 972 | WP_131246424.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| EXW46_RS15475 (EXW46_15765) | rpsO | 2975863..2976132 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.99 Da Isoelectric Point: 4.7251
>NTDB_id=346600 EXW46_RS15375 WP_002014541.1 2953965..2954744(+) (codY) [Bacillus mycoides strain JAS12/5]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=346600 EXW46_RS15375 WP_002014541.1 2953965..2954744(+) (codY) [Bacillus mycoides strain JAS12/5]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.275 |
98.456 |
0.456 |