Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EXW41_RS21455 Genome accession   NZ_CP036070
Coordinates   4218195..4220531 (-) Length   778 a.a.
NCBI ID   WP_088064458.1    Uniprot ID   -
Organism   Bacillus wiedmannii strain JAS07/5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4213195..4225531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW41_RS21430 (EXW41_21670) - 4215857..4216201 (+) 345 WP_060488234.1 PH domain-containing protein -
  EXW41_RS21435 (EXW41_21675) - 4216240..4217307 (-) 1068 WP_048541428.1 AI-2E family transporter -
  EXW41_RS21440 (EXW41_21680) - 4217484..4217696 (+) 213 WP_000242555.1 hypothetical protein -
  EXW41_RS21445 (EXW41_21685) - 4217732..4217860 (-) 129 WP_001053553.1 YrzQ family protein -
  EXW41_RS21450 (EXW41_21690) - 4217879..4218067 (-) 189 WP_000469281.1 hypothetical protein -
  EXW41_RS21455 (EXW41_21695) recD2 4218195..4220531 (-) 2337 WP_088064458.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EXW41_RS21460 (EXW41_21700) - 4220628..4221287 (-) 660 WP_000066396.1 tetratricopeptide repeat protein -
  EXW41_RS21465 (EXW41_21705) mnmA 4221398..4222513 (-) 1116 WP_001038022.1 tRNA 2-thiouridine(34) synthase MnmA -
  EXW41_RS21470 (EXW41_21710) - 4222530..4223675 (-) 1146 WP_000439914.1 cysteine desulfurase family protein -
  EXW41_RS21475 (EXW41_21715) - 4223711..4224127 (-) 417 WP_000704116.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87298.75 Da        Isoelectric Point: 5.3194

>NTDB_id=346445 EXW41_RS21455 WP_088064458.1 4218195..4220531(-) (recD2) [Bacillus wiedmannii strain JAS07/5]
MGNQHAMDLFEEDKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMGKNQLVRETMSLLNNQEGRVTEEDIVACVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIHRLMNQEETPS
FPEAEVLKTLGQIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLANRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=346445 EXW41_RS21455 WP_088064458.1 4218195..4220531(-) (recD2) [Bacillus wiedmannii strain JAS07/5]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGATAAAAAGTTTATAAAAGCGCAAGTTCTTCACACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAGACGAATGAAACGTACGACGAAAAAAAAGTGATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGGCATTTTAAAGACCATCCGAAGTATGGG
AAACAATATTTAGTTGAAACATTTAAGAAAGAATTGCCGCAAACAAAAGCTGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTGGATCATCTTGGGGAACATGCCATCTCTAAAATTATGGATG
ATCCGGATGCGTTAAATGGTGTTGTCAATAAGCAAAAAGCTCAAGAAATATATGAGACAATTGTTGAACATCAAGGACTA
GAGAAAGTAATGAGTTTTTTAAATGGTTACGGTTTTGGAACGAAGCTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAGCTTATTGAAGAAGTGGACGGGATTGGATTTGGAAGAGCGGATGATA
TAGGACGTGCGTTAGGTATATCGGGTAATCATGATGACCGTGTACGTGCGGGTTGTTTTTATACGTTAGAGAATGTTTCT
TTGCAACTTGGTCATGTTTATATGGGAAAAAATCAACTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGAAG
AGTGACCGAGGAAGACATTGTAGCTTGCGTTGAAATGATGCAAAGTGAAGGGAAAGTTATCATAGAAGAAGAACGAGTGT
ATTTAGCATCGTTATTCTACTCAGAAAAAGGTGTTGTAAAGTCTATTCACAGGCTTATGAATCAGGAGGAAACACCCTCA
TTTCCTGAAGCAGAAGTGTTAAAGACGTTAGGTCAAATTGAAGAACAACTGAATGTACAGTATGCACCGTTTCAACAAGA
AGCGATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATACAGTGACGATAATCCATTTCCGATA
TTATTAACGGCCCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCAACGGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACCCCAGAAGGGTCTTTCCAGCGTAATGAAACGGATCCGGTACAAGGGAAATTGCTTATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTGTTTAAATCATTGCCGACTAACATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAATTACCATCTGTAGGACCTGGACAAGTGTTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTGAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCTGTTATTCAACTCGCCCATGCGATAAAAAATGGAACGCTTCCACCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGTACAGGAGCTCAAATTGTTGAGGTTGTTAAGAAGGTTTGT
GAAAATGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTACTGGCCCCGATGTATCGTGGCCCTGCCGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTACTGCAACTCGTTAATCAACCGGAGAGCCAAGTGTTTAATGGTGATATCGGAGAAATTGTT
TCGGTGTTTTATGCGAAAGAGAACGTTGAACAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACGTATAC
AAAGCCAGACTTAAATCAAATTACACATGCCTATTGCTGTTCGATTCATAAATCGCAAGGTAGTGAGTTTCCGATTGTGA
TTATGCCGATAGTGAAAAGTTACAATCGTATGTTACGTCGTAATTTAATTTACACTGGTATTACAAGAAGTAAAAAGTTC
CTCATTATTTGCGGGGAGGAAGCAGCTTTCCAATCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
GAATCGTTTGCAAGAATCACAAGGAGAAGTACAGATGGTAACAGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577

Multiple sequence alignment