Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EXW62_RS20505 Genome accession   NZ_CP036034
Coordinates   4037979..4040315 (-) Length   778 a.a.
NCBI ID   WP_215554264.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN57/2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4032979..4045315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW62_RS20480 (EXW62_20935) alaS 4033008..4035650 (-) 2643 WP_016106212.1 alanine--tRNA ligase -
  EXW62_RS20485 (EXW62_20940) - 4036023..4037090 (-) 1068 WP_002138436.1 AI-2E family transporter -
  EXW62_RS20490 (EXW62_20945) - 4037267..4037479 (+) 213 WP_215554263.1 hypothetical protein -
  EXW62_RS20495 (EXW62_20950) - 4037516..4037644 (-) 129 WP_002015286.1 YrzQ family protein -
  EXW62_RS20500 (EXW62_20955) - 4037663..4037851 (-) 189 WP_002015288.1 hypothetical protein -
  EXW62_RS20505 (EXW62_20960) recD2 4037979..4040315 (-) 2337 WP_215554264.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EXW62_RS20510 (EXW62_20965) - 4040423..4041082 (-) 660 WP_215554265.1 tetratricopeptide repeat protein -
  EXW62_RS20515 (EXW62_20970) mnmA 4041193..4042308 (-) 1116 WP_002160392.1 tRNA 2-thiouridine(34) synthase MnmA -
  EXW62_RS20520 (EXW62_20975) - 4042325..4043470 (-) 1146 WP_215554266.1 cysteine desulfurase family protein -
  EXW62_RS20525 (EXW62_20980) - 4043506..4043922 (-) 417 WP_000704117.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87156.77 Da        Isoelectric Point: 5.3335

>NTDB_id=346093 EXW62_RS20505 WP_215554264.1 4037979..4040315(-) (recD2) [Bacillus mycoides strain BPN57/2]
MGNQHAMDLFEEEKKFVKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALSGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRAIGITGNHDDRVRAGCFYTLENIS
LQLGHVYMEKGQLVRETMSLLNNQEGRVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGVSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKGGALPPDLAQNKKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=346093 EXW62_RS20505 WP_215554264.1 4037979..4040315(-) (recD2) [Bacillus mycoides strain BPN57/2]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAATTTGTAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATACGACGAAAAAAAGGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGACCACCCAAAGTATGGA
AAACAATATTTAGTTGAAACGTTTAAAAAAGAACTGCCACAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCCGAAAAAATCGTGGACCATCTTGGTGAGCATGCGATTTCTAAAATTATGGATG
ATCCGGATGCGTTAAGTGGTGTTGTAAACAAGCAAAAAGCGCAGGAAATATATGAGACGATTATTGAGCATCAAGGGCTC
GAGAAAGTGATGAGTTTTTTAAATGGTTACGGTTTTGGAACAAAACTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAACTTATTGAAGAAGTGGACGGAATTGGATTTGGAAGAGCAGATGATA
TAGGGCGTGCAATCGGAATAACGGGCAATCACGACGACCGTGTACGTGCAGGGTGTTTTTATACGTTAGAGAATATTTCA
TTACAACTCGGTCACGTGTATATGGAAAAAGGTCAGCTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGCAG
AGTGACTGAGGAAGATATTGTAGGCTGCGTTGAAATGATGCAAAGCGAAGGGAAAGTCATTATAGAAGAAGAGCGAGTGT
ATTTAGCTTCTTTATTCTATTCTGAGAAAGGCGTTGTAAAGTCAATTCGTCGTCTTATGAATCAAGAAGAAACCCCTGCA
TTCCCTGAAGCAGAAGTGTTAAAAACATTAGGAGAAATTGAAGAACAGCTAAAGGTGCAGTATGCGCCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGTTATTAACAGGTGGACCAGGAACGGGGAAAACAACAGTTATTAAAG
GGATTGTTGAAATGTATGCGTCACTTCACGGAGTATCATTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATT
TTATTAACGGCTCCAACTGGAAGAGCAGCGAAGCGAATGAGTGAATCGACGGGGCTTCCGGCGTGCACAATTCATCGTCT
ACTCGGTTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACCGATCCAGTACAAGGAAAGTTACTCATTATTGATGAGT
TTTCAATGGTTGACATTTGGCTTGCAAATCAGCTGTTTAAGTCGCTTCCGACAAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTGCTAAAAGACTTATTGAATGCAGGTGCAGTTCCAACGGTCAAGCT
TACAGAAATTTATCGTCAAGCGGAAGGGTCATCTGTTATTCAGCTTGCCCATGCGATAAAAGGTGGTGCGCTTCCGCCAG
ATTTAGCACAAAATAAAAAAGATCGTTCCTTTATTTCTTGTACAGGCGCTCAAATCGTTGAAGTTGTAAAAAAAGTATGT
GAAAATGCCAAGACAAAAGGATTTAGCGCAAGAGATGTACAAGTGTTGGCACCTATGTACCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTCCAAGAAGTGTTTAATCCGAAAAGGGAAAAAAGTAAAGAAATTGCATATGGTGATGTTGTAT
ACCGCAGAGGAGATAAAGTACTGCAACTCGTCAATCAGCCGGAAAGCCAAGTATTTAATGGTGATATCGGAGAAATCGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATTGTTTCGTTTGATGGGATTGAAGTAACGTATAC
AAAGCCAGATTTAAATCAAATTACACATGCATATTGCTGCTCGATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATTGTAAAAAGCTACAACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGAAGTAAGAAATTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTTCAATCCGGTGTGAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGTCGATTGCAAGAATCACAAGGCGAAGTGCAAATGGTGACGGTTAATGGTGAAGAAATGGATGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577

Multiple sequence alignment