Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EXW62_RS17590 Genome accession   NZ_CP036034
Coordinates   3510040..3510819 (-) Length   259 a.a.
NCBI ID   WP_215553959.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN57/2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3505040..3515819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW62_RS17565 (EXW62_17960) uppS 3505783..3506559 (-) 777 WP_002111371.1 isoprenyl transferase -
  EXW62_RS17570 (EXW62_17965) frr 3506645..3507202 (-) 558 WP_215553958.1 ribosome recycling factor -
  EXW62_RS17575 (EXW62_17970) pyrH 3507206..3507928 (-) 723 WP_002146098.1 UMP kinase -
  EXW62_RS17580 (EXW62_17975) tsf 3507995..3508882 (-) 888 WP_002160738.1 translation elongation factor Ts -
  EXW62_RS17585 (EXW62_17980) rpsB 3508986..3509687 (-) 702 WP_002088178.1 30S ribosomal protein S2 -
  EXW62_RS17590 (EXW62_17985) codY 3510040..3510819 (-) 780 WP_215553959.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EXW62_RS17595 (EXW62_17990) hslU 3510897..3512288 (-) 1392 WP_002146096.1 ATP-dependent protease ATPase subunit HslU -
  EXW62_RS17600 (EXW62_17995) hslV 3512311..3512853 (-) 543 WP_002014538.1 ATP-dependent protease proteolytic subunit HslV -
  EXW62_RS17605 (EXW62_18000) xerC 3512896..3513795 (-) 900 WP_078175468.1 tyrosine recombinase XerC -
  EXW62_RS17610 (EXW62_18005) trmFO 3513867..3515171 (-) 1305 WP_002066796.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28739.95 Da        Isoelectric Point: 4.7884

>NTDB_id=346085 EXW62_RS17590 WP_215553959.1 3510040..3510819(-) (codY) [Bacillus mycoides strain BPN57/2]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMQHMLAERQFPEEYTQSLF
HVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
AIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=346085 EXW62_RS17590 WP_215553959.1 3510040..3510819(-) (codY) [Bacillus mycoides strain BPN57/2]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAGAACGAACGTATGCAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGCTTATTC
CATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GCAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTGAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

79.923

100

0.799
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456

Multiple sequence alignment