Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EXW38_RS21680 Genome accession   NZ_CP036026
Coordinates   4178154..4180490 (-) Length   778 a.a.
NCBI ID   WP_016106214.1    Uniprot ID   R8Q3R7
Organism   Bacillus mycoides strain BPN54/2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4173154..4185490
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW38_RS21655 (EXW38_21985) alaS 4173184..4175826 (-) 2643 WP_016106212.1 alanine--tRNA ligase -
  EXW38_RS21660 (EXW38_21990) - 4176199..4177266 (-) 1068 WP_002138436.1 AI-2E family transporter -
  EXW38_RS21665 (EXW38_21995) - 4177443..4177655 (+) 213 WP_215572069.1 hypothetical protein -
  EXW38_RS21670 (EXW38_22000) - 4177691..4177819 (-) 129 WP_002015286.1 YrzQ family protein -
  EXW38_RS21675 (EXW38_22005) - 4177838..4178026 (-) 189 WP_002015288.1 hypothetical protein -
  EXW38_RS21680 (EXW38_22010) recD2 4178154..4180490 (-) 2337 WP_016106214.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EXW38_RS21685 (EXW38_22015) - 4180598..4181257 (-) 660 WP_016106215.1 tetratricopeptide repeat protein -
  EXW38_RS21690 (EXW38_22020) mnmA 4181368..4182483 (-) 1116 WP_002160392.1 tRNA 2-thiouridine(34) synthase MnmA -
  EXW38_RS21695 (EXW38_22025) - 4182500..4183645 (-) 1146 WP_016106216.1 cysteine desulfurase family protein -
  EXW38_RS21700 (EXW38_22030) cymR 4183681..4184097 (-) 417 WP_000704117.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87170.79 Da        Isoelectric Point: 5.3335

>NTDB_id=346043 EXW38_RS21680 WP_016106214.1 4178154..4180490(-) (recD2) [Bacillus mycoides strain BPN54/2]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALSGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRAIGITGNHDDRVRAGCFYTLENIS
LQLGHVYMEKGQLVRETMSLLNNQEGRVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGVSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKGGALPPDLAQNKKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=346043 EXW38_RS21680 WP_016106214.1 4178154..4180490(-) (recD2) [Bacillus mycoides strain BPN54/2]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGACCACCCAAAGTATGGA
AAACAATATTTAGTTGAAACGTTTAAAAAAGAACTGCCACAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCCGAAAAAATCGTGGACCATCTTGGTGAGCATGCGATTTCTAAAATTATGGATG
ATCCGGATGCGTTAAGTGGTGTTGTAAACAAGCAAAAAGCGCAGGAAATATATGAGACGATTATTGAGCATCAAGGGCTC
GAGAAAGTGATGAGTTTTTTAAATGGTTACGGTTTTGGAACAAAACTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAACTTATTGAAGAAGTGGACGGAATTGGATTTGGAAGAGCAGATGATA
TAGGGCGTGCAATCGGAATAACGGGCAATCACGACGACCGTGTACGTGCAGGGTGTTTTTATACGTTAGAGAATATTTCA
TTACAACTCGGTCACGTGTATATGGAAAAAGGTCAGCTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGCAG
AGTGACTGAGGAAGATATTGTAGGCTGCGTTGAAATGATGCAAAGCGAAGGGAAAGTCATTATAGAAGAAGAGCGAGTGT
ATTTAGCTTCTTTATTCTATTCTGAGAAAGGTGTTGTAAAGTCGATCCGTCGTCTTATGAATCAAGAAGAAACCCCTGCA
TTCCCTGAAGCAGAAGTGTTAAAAACATTAGGAGAAATTGAAGAACAGCTAAAGGTGCAGTATGCGCCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGCTATTAACAGGTGGACCAGGAACGGGGAAAACAACAGTTATTAAAG
GGATTGTTGAAATGTATGCATCGCTTCACGGAGTATCATTAAATCCGAATGAATATAGTGATGATAATCCATTTCCGATT
TTATTAACGGCTCCAACTGGAAGAGCAGCGAAGCGAATGAGTGAATCGACGGGGCTTCCGGCGTGCACAATTCATCGTCT
ACTCGGTTGGACGCCAGAAGGATCTTTCCAGCGTAATGAAACCGATCCAGTACAAGGAAAGTTACTCATTATTGATGAGT
TTTCAATGGTAGACATTTGGCTTGCAAATCAGCTGTTTAAGTCGCTTCCGACAAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTGCTAAAAGACTTATTGAATGCAGGTGCAGTTCCAACGGTCAAGCT
TACAGAAATTTATCGTCAAGCGGAAGGGTCATCTGTTATTCAGCTTGCCCATGCGATAAAAGGTGGTGCGCTTCCGCCAG
ATTTAGCACAAAATAAAAAGGATCGTTCCTTTATTTCTTGTACAGGCGCTCAAATCGTTGAAGTTGTAAAAAAAGTATGT
GAAAATGCCAAGACAAAAGGATTTAGCGCAAGAGATGTACAAGTGTTGGCACCTATGTACCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTCCAAGAAGTGTTTAATCCGAAAAGGGAAAAAAGTAAAGAAATTGCATACGGTGACGTTGTAT
ACCGCAGAGGAGATAAAGTACTGCAACTCGTCAATCAGCCGGAAAGCCAAGTATTTAATGGTGATATCGGAGAAATCGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGGATTGAAGTAACGTATAC
AAAGCCAGATTTAAATCAAATTACACATGCATATTGCTGCTCGATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATTGTAAAAAGCTATAATCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGAAGTAAGAAATTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTTCAATCCGGTGTGAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGCCGATTGCAAGAATCACAAGGCGAAGTGCAAATGGTGACGGTTAATGGTGAAGAAATGGATGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8Q3R7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577

Multiple sequence alignment