Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EXW38_RS18810 Genome accession   NZ_CP036026
Coordinates   3648087..3648866 (-) Length   259 a.a.
NCBI ID   WP_002160737.1    Uniprot ID   J8FCW8
Organism   Bacillus mycoides strain BPN54/2     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3643087..3653866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW38_RS18785 (EXW38_19060) uppS 3643829..3644605 (-) 777 WP_002111371.1 isoprenyl transferase -
  EXW38_RS18790 (EXW38_19065) frr 3644691..3645248 (-) 558 WP_000531506.1 ribosome recycling factor -
  EXW38_RS18795 (EXW38_19070) pyrH 3645252..3645974 (-) 723 WP_002146098.1 UMP kinase -
  EXW38_RS18800 (EXW38_19075) tsf 3646041..3646928 (-) 888 WP_002160738.1 translation elongation factor Ts -
  EXW38_RS18805 (EXW38_19080) rpsB 3647032..3647733 (-) 702 WP_002088178.1 30S ribosomal protein S2 -
  EXW38_RS18810 (EXW38_19085) codY 3648087..3648866 (-) 780 WP_002160737.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EXW38_RS18815 (EXW38_19090) hslU 3648944..3650335 (-) 1392 WP_002111373.1 ATP-dependent protease ATPase subunit HslU -
  EXW38_RS18820 (EXW38_19095) hslV 3650358..3650900 (-) 543 WP_002014538.1 ATP-dependent protease proteolytic subunit HslV -
  EXW38_RS18825 (EXW38_19100) xerC 3650943..3651842 (-) 900 WP_078172994.1 tyrosine recombinase XerC -
  EXW38_RS18830 (EXW38_19105) trmFO 3651914..3653218 (-) 1305 WP_002066796.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28798.03 Da        Isoelectric Point: 4.8024

>NTDB_id=346035 EXW38_RS18810 WP_002160737.1 3648087..3648866(-) (codY) [Bacillus mycoides strain BPN54/2]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
HVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=346035 EXW38_RS18810 WP_002160737.1 3648087..3648866(-) (codY) [Bacillus mycoides strain BPN54/2]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAGAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGCTTATTC
CATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTGAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8FCW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

80.695

100

0.807
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456

Multiple sequence alignment