Detailed information
Bioinformatically predicted
Overview
| Name | pilH | Type | Machinery gene |
| Locus tag | GFD20_RS26915 | Genome accession | NZ_CP045768 |
| Coordinates | 5870355..5870720 (+) | Length | 121 a.a. |
| NCBI ID | WP_003084587.1 | Uniprot ID | A0A0H2ZKW2 |
| Organism | Pseudomonas aeruginosa strain CFSAN084950 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 5865355..5875720
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFD20_RS26885 (GFD20_26885) | pyrR | 5865977..5866489 (-) | 513 | WP_003084574.1 | bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR | - |
| GFD20_RS26890 (GFD20_26890) | ruvX | 5866601..5867035 (-) | 435 | WP_003121753.1 | Holliday junction resolvase RuvX | - |
| GFD20_RS26895 (GFD20_26895) | - | 5867035..5867604 (-) | 570 | WP_003100947.1 | YqgE/AlgH family protein | - |
| GFD20_RS26900 (GFD20_26900) | - | 5867653..5868546 (-) | 894 | WP_003160914.1 | energy transducer TonB | - |
| GFD20_RS26905 (GFD20_26905) | gshB | 5868693..5869646 (-) | 954 | WP_042853546.1 | glutathione synthase | - |
| GFD20_RS26910 (GFD20_26910) | pilG | 5869901..5870308 (+) | 408 | WP_003084583.1 | twitching motility response regulator PilG | Regulator |
| GFD20_RS26915 (GFD20_26915) | pilH | 5870355..5870720 (+) | 366 | WP_003084587.1 | twitching motility response regulator PilH | Machinery gene |
| GFD20_RS26920 (GFD20_26920) | - | 5870771..5871307 (+) | 537 | WP_003084590.1 | chemotaxis protein CheW | - |
| GFD20_RS26925 (GFD20_26925) | pilJ | 5871392..5873440 (+) | 2049 | WP_003100940.1 | chemotaxis chemoreceptor PilJ | - |
| GFD20_RS26930 (GFD20_26930) | pilK | 5873501..5874376 (+) | 876 | WP_003100938.1 | type 4 fimbrial methyltransferase PilK | - |
Sequence
Protein
Download Length: 121 a.a. Molecular weight: 13273.30 Da Isoelectric Point: 5.1961
>NTDB_id=345935 GFD20_RS26915 WP_003084587.1 5870355..5870720(+) (pilH) [Pseudomonas aeruginosa strain CFSAN084950]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG
Nucleotide
Download Length: 366 bp
>NTDB_id=345935 GFD20_RS26915 WP_003084587.1 5870355..5870720(+) (pilH) [Pseudomonas aeruginosa strain CFSAN084950]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilH | Synechocystis sp. PCC 6803 |
36.975 |
98.347 |
0.364 |