Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EXW33_RS04065 Genome accession   NZ_CP036014
Coordinates   844056..844835 (-) Length   259 a.a.
NCBI ID   WP_000421291.1    Uniprot ID   A0A1V6LJD3
Organism   Bacillus toyonensis strain BPN45/4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 839056..849835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW33_RS04040 (EXW33_04190) uppS 839805..840581 (-) 777 WP_000971308.1 isoprenyl transferase -
  EXW33_RS04045 (EXW33_04195) frr 840667..841224 (-) 558 WP_000531505.1 ribosome recycling factor -
  EXW33_RS04050 (EXW33_04200) pyrH 841227..841949 (-) 723 WP_000042662.1 UMP kinase -
  EXW33_RS04055 (EXW33_04205) tsf 842016..842903 (-) 888 WP_001018579.1 translation elongation factor Ts -
  EXW33_RS04060 (EXW33_04210) rpsB 843007..843708 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  EXW33_RS04065 (EXW33_04215) codY 844056..844835 (-) 780 WP_000421291.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EXW33_RS04070 (EXW33_04220) hslU 844913..846304 (-) 1392 WP_000550076.1 ATP-dependent protease ATPase subunit HslU -
  EXW33_RS04075 (EXW33_04225) hslV 846327..846869 (-) 543 WP_000526274.1 ATP-dependent protease proteolytic subunit HslV -
  EXW33_RS04080 (EXW33_04230) xerC 846912..847811 (-) 900 WP_001101240.1 tyrosine recombinase XerC -
  EXW33_RS04085 (EXW33_04235) trmFO 847877..849181 (-) 1305 WP_000212000.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28788.03 Da        Isoelectric Point: 4.7947

>NTDB_id=345859 EXW33_RS04065 WP_000421291.1 844056..844835(-) (codY) [Bacillus toyonensis strain BPN45/4]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NVTETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=345859 EXW33_RS04065 WP_000421291.1 844056..844835(-) (codY) [Bacillus toyonensis strain BPN45/4]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGATACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAACGAGCGTATGAAACAAATGCTTGCAGAGCGTCAATTCCCAGAAGAATATACGCAAAGCTTATTC
AATGTAACGGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTGTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAATACAGTTCAACTGTAGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCACATTTTCGAAGAGTTAAACGGAACAGAAGGTCTACTTGTTGCAAGTAAAATTGCTGATCGTGTAGGAATCACTC
GTTCTGTGATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATCGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTTTTACATGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.853

100

0.819
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456

Multiple sequence alignment