Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EXW40_RS12755 Genome accession   NZ_CP036009
Coordinates   2523540..2525414 (+) Length   624 a.a.
NCBI ID   WP_215587876.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN43/2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2518540..2530414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW40_RS12740 (EXW40_12955) - 2518861..2519976 (+) 1116 WP_215587875.1 FAD-binding oxidoreductase -
  EXW40_RS12745 (EXW40_12960) pssA 2520422..2520913 (-) 492 WP_088039454.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  EXW40_RS12750 (EXW40_12965) - 2521297..2523543 (+) 2247 WP_088039455.1 ABC transporter ATP-binding protein -
  EXW40_RS12755 (EXW40_12970) rcrQ 2523540..2525414 (+) 1875 WP_215587876.1 ABC transporter ATP-binding protein Regulator
  EXW40_RS12760 (EXW40_12975) - 2525789..2527507 (+) 1719 WP_215587877.1 thiamine pyrophosphate-binding protein -
  EXW40_RS12765 (EXW40_12980) - 2527599..2529029 (+) 1431 WP_215587878.1 PQQ-dependent sugar dehydrogenase -
  EXW40_RS12770 (EXW40_12985) - 2529228..2529800 (+) 573 WP_215587879.1 hypothetical protein -

Sequence

Protein


Download         Length: 624 a.a.        Molecular weight: 69101.05 Da        Isoelectric Point: 6.4361

>NTDB_id=345828 EXW40_RS12755 WP_215587876.1 2523540..2525414(+) (rcrQ) [Bacillus mycoides strain BPN43/2]
MSDRKIENRKQSGPGPGGGGPMGGGMRKIEKAKNFKGTMNKLLQYLNPYKLSILIVILFAIGSAAFTIVGPKILGNATTK
LFEGLVSKVSGAPGAAIDFTYIGNIVILLLGLYILSTVFGIIQGYIISGVAQKVSYNFRKEIDEKINRMPLKYFDKTTHG
EVLSRITNDVDTVSQTLNQSMSQIITSVITIIGVLIMMLSISWQMTLVALLILPVSMILIMAVVKRSQKYFKSQQEYLGH
VNGQVEEIYSGHNIVKAFNKEEEEVKKFEKVNDTLYHSAWKSQFLSGMMMPIMTFIGNIGYVAVSILGGWLAVKRTIAVG
DILAFVQYVRSFTQPIAQVAQIANVLQSTAAAAERVFEFLEEEEEVPEAENPVKLQKVQGEVNFQDVQFGYNPDKIIINN
FSANIKPGQKVAIVGPTGAGKTTIVKLLMRFYDINSGAICIDGHDIKDFTREDLRSMFGMVLQDTWLFNGSIMENIRYGR
LDATDEEVIEAAKAAHVHNFVKTLPNKYQMELNEEASNVSQGQKQLLTIARALIADPKILILDEATSSIDTRTEVLIQKA
MENLMEGRTSFIIAHRLSTIRDADLILVMKDGDIVEQGNHEELLKADGFYASLYNSQFEGADAS

Nucleotide


Download         Length: 1875 bp        

>NTDB_id=345828 EXW40_RS12755 WP_215587876.1 2523540..2525414(+) (rcrQ) [Bacillus mycoides strain BPN43/2]
ATGAGTGATAGAAAAATAGAAAATAGAAAACAAAGCGGCCCTGGTCCTGGCGGTGGCGGTCCTATGGGCGGCGGCATGAG
AAAGATTGAGAAAGCAAAAAACTTCAAAGGAACGATGAATAAACTCCTTCAATACTTGAATCCCTATAAATTATCAATCT
TAATCGTTATCCTTTTCGCAATCGGCAGTGCAGCCTTTACAATCGTTGGTCCAAAAATTTTAGGAAACGCGACAACAAAA
CTTTTCGAAGGACTCGTAAGCAAAGTATCAGGAGCACCCGGTGCGGCCATTGACTTTACCTATATCGGAAACATTGTCAT
TTTACTCCTTGGATTATATATATTGAGCACTGTGTTTGGTATTATCCAGGGGTACATTATTTCTGGAGTAGCTCAAAAAG
TATCTTATAACTTCAGAAAAGAAATCGATGAAAAAATTAACCGTATGCCGCTGAAATACTTTGATAAAACAACGCACGGC
GAAGTATTATCGAGAATTACAAATGACGTAGATACGGTGAGCCAAACTTTAAACCAAAGTATGTCGCAAATCATCACATC
CGTTATTACAATCATCGGTGTACTTATCATGATGTTATCAATCAGCTGGCAAATGACATTAGTGGCGCTTTTAATATTGC
CAGTATCGATGATTCTCATCATGGCAGTCGTAAAACGATCACAAAAATACTTCAAATCCCAGCAAGAATATTTAGGACAC
GTAAACGGTCAGGTCGAAGAAATTTATAGTGGTCACAATATCGTAAAAGCCTTCAACAAAGAAGAAGAAGAAGTGAAAAA
ATTCGAAAAGGTAAATGATACCCTTTACCATTCCGCATGGAAATCTCAATTTTTATCTGGAATGATGATGCCGATTATGA
CATTTATCGGTAATATCGGTTACGTCGCTGTATCTATTTTAGGTGGATGGCTTGCGGTAAAGAGAACCATCGCAGTTGGA
GACATTTTAGCCTTTGTGCAATATGTTAGAAGCTTTACGCAACCAATCGCTCAAGTAGCACAAATCGCGAACGTACTTCA
ATCTACTGCAGCTGCTGCAGAAAGAGTCTTCGAATTTTTAGAAGAAGAAGAGGAAGTGCCAGAAGCAGAAAATCCAGTGA
AGTTGCAAAAAGTTCAAGGAGAAGTTAACTTTCAAGATGTTCAATTTGGATACAATCCAGATAAGATCATCATCAATAAT
TTCTCAGCTAACATTAAGCCTGGACAAAAAGTAGCAATCGTCGGACCAACCGGAGCTGGTAAAACAACGATTGTAAAACT
GTTAATGCGTTTCTATGATATAAACAGCGGTGCAATATGTATCGACGGTCACGATATAAAAGACTTCACGCGAGAAGACC
TGCGCAGCATGTTTGGTATGGTACTTCAAGACACTTGGCTATTTAACGGCTCTATCATGGAAAATATACGTTACGGTAGA
CTCGATGCTACAGACGAAGAAGTAATTGAAGCAGCGAAAGCAGCTCACGTTCACAACTTCGTAAAAACATTACCAAATAA
ATATCAAATGGAACTAAACGAAGAAGCAAGCAACGTATCCCAAGGACAAAAGCAACTACTAACAATTGCACGTGCCCTTA
TAGCGGATCCGAAAATATTAATACTCGATGAAGCAACAAGCTCCATTGACACTCGTACAGAAGTACTGATTCAAAAAGCG
ATGGAAAACCTTATGGAAGGTAGAACAAGCTTCATTATCGCTCATAGATTATCAACAATACGTGATGCAGATTTAATCCT
TGTCATGAAAGACGGAGATATTGTAGAACAAGGTAATCATGAAGAGTTATTGAAAGCTGATGGTTTCTATGCTTCGCTTT
ATAATAGTCAGTTTGAAGGTGCGGATGCTTCTTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(53-335)

ABC transporter (ABC_tran)

(399-547)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.458

93.429

0.481

Multiple sequence alignment