Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | EXW61_RS06910 | Genome accession | NZ_CP036004 |
| Coordinates | 1272778..1273557 (+) | Length | 259 a.a. |
| NCBI ID | WP_002014541.1 | Uniprot ID | - |
| Organism | Bacillus mycoides strain BPN37/2 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1235393..1298263 | 1272778..1273557 | within | 0 |
Gene organization within MGE regions
Location: 1235393..1298263
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXW61_RS06730 (EXW61_06860) | - | 1236396..1237148 (+) | 753 | WP_002066780.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| EXW61_RS06735 (EXW61_06865) | pknB | 1237157..1239130 (+) | 1974 | WP_078184343.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| EXW61_RS06740 (EXW61_06870) | rsgA | 1239401..1240282 (+) | 882 | WP_002014503.1 | ribosome small subunit-dependent GTPase A | - |
| EXW61_RS06745 (EXW61_06875) | rpe | 1240285..1240929 (+) | 645 | WP_002014505.1 | ribulose-phosphate 3-epimerase | - |
| EXW61_RS06750 (EXW61_06880) | - | 1241030..1241710 (+) | 681 | WP_002014506.1 | thiamine diphosphokinase | - |
| EXW61_RS06755 (EXW61_06885) | spoVM | 1241777..1241857 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| EXW61_RS06760 (EXW61_06890) | rpmB | 1241931..1242119 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| EXW61_RS06765 (EXW61_06895) | - | 1242498..1242860 (+) | 363 | WP_002014507.1 | Asp23/Gls24 family envelope stress response protein | - |
| EXW61_RS06770 (EXW61_06900) | - | 1242883..1244559 (+) | 1677 | WP_002014508.1 | DAK2 domain-containing protein | - |
| EXW61_RS06775 (EXW61_06910) | recG | 1244985..1247033 (+) | 2049 | WP_215599384.1 | ATP-dependent DNA helicase RecG | - |
| EXW61_RS06780 (EXW61_06915) | fapR | 1247122..1247715 (+) | 594 | WP_000747354.1 | transcription factor FapR | - |
| EXW61_RS06785 (EXW61_06920) | plsX | 1247712..1248704 (+) | 993 | WP_215599385.1 | phosphate acyltransferase PlsX | - |
| EXW61_RS06790 (EXW61_06925) | fabD | 1248719..1249663 (+) | 945 | WP_215599386.1 | ACP S-malonyltransferase | - |
| EXW61_RS06795 (EXW61_06930) | fabG | 1249663..1250403 (+) | 741 | WP_002014514.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| EXW61_RS06800 (EXW61_06935) | acpP | 1250473..1250706 (+) | 234 | WP_002014515.1 | acyl carrier protein | - |
| EXW61_RS06805 (EXW61_06940) | rncS | 1250765..1251502 (+) | 738 | WP_002033792.1 | ribonuclease III | - |
| EXW61_RS06810 (EXW61_06945) | smc | 1251651..1255220 (+) | 3570 | WP_215599387.1 | chromosome segregation protein SMC | - |
| EXW61_RS06815 (EXW61_06950) | ftsY | 1255235..1256224 (+) | 990 | WP_002185064.1 | signal recognition particle-docking protein FtsY | - |
| EXW61_RS06820 (EXW61_06955) | - | 1256357..1256689 (+) | 333 | WP_002033794.1 | putative DNA-binding protein | - |
| EXW61_RS06825 (EXW61_06960) | ffh | 1256702..1258051 (+) | 1350 | WP_002014519.1 | signal recognition particle protein | - |
| EXW61_RS06830 (EXW61_06965) | rpsP | 1258152..1258424 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| EXW61_RS06835 (EXW61_06970) | - | 1258439..1258666 (+) | 228 | WP_002088196.1 | KH domain-containing protein | - |
| EXW61_RS06840 (EXW61_06975) | rimM | 1258788..1259303 (+) | 516 | WP_098167434.1 | ribosome maturation factor RimM | - |
| EXW61_RS06845 (EXW61_06980) | trmD | 1259303..1260037 (+) | 735 | WP_098167435.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| EXW61_RS06850 (EXW61_06985) | rplS | 1260184..1260528 (+) | 345 | WP_002014524.1 | 50S ribosomal protein L19 | - |
| EXW61_RS06855 (EXW61_06990) | lepB | 1260629..1261180 (+) | 552 | WP_002066791.1 | signal peptidase I | - |
| EXW61_RS06860 (EXW61_06995) | ylqF | 1261201..1262091 (+) | 891 | WP_002014526.1 | ribosome biogenesis GTPase YlqF | - |
| EXW61_RS06865 (EXW61_07000) | - | 1262147..1262920 (+) | 774 | WP_098167436.1 | ribonuclease HII | - |
| EXW61_RS06870 (EXW61_07005) | sucC | 1263114..1264274 (+) | 1161 | WP_002014529.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| EXW61_RS06875 (EXW61_07010) | sucD | 1264294..1265196 (+) | 903 | WP_000115186.1 | succinate--CoA ligase subunit alpha | - |
| EXW61_RS06880 (EXW61_07015) | dprA | 1265285..1266154 (+) | 870 | WP_078184340.1 | DNA-processing protein DprA | - |
| EXW61_RS06885 (EXW61_07020) | topA | 1266299..1268377 (+) | 2079 | WP_002088184.1 | type I DNA topoisomerase | - |
| EXW61_RS06890 (EXW61_07025) | trmFO | 1268426..1269730 (+) | 1305 | WP_002014534.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| EXW61_RS06895 (EXW61_07030) | xerC | 1269802..1270701 (+) | 900 | WP_078184477.1 | tyrosine recombinase XerC | - |
| EXW61_RS06900 (EXW61_07035) | hslV | 1270744..1271286 (+) | 543 | WP_002014538.1 | ATP-dependent protease proteolytic subunit HslV | - |
| EXW61_RS06905 (EXW61_07040) | hslU | 1271309..1272700 (+) | 1392 | WP_002167751.1 | ATP-dependent protease ATPase subunit HslU | - |
| EXW61_RS06910 (EXW61_07045) | codY | 1272778..1273557 (+) | 780 | WP_002014541.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| EXW61_RS06915 (EXW61_07050) | rpsB | 1273912..1274613 (+) | 702 | WP_002088178.1 | 30S ribosomal protein S2 | - |
| EXW61_RS06920 (EXW61_07055) | tsf | 1274717..1275604 (+) | 888 | WP_002088177.1 | translation elongation factor Ts | - |
| EXW61_RS06925 (EXW61_07060) | pyrH | 1275671..1276393 (+) | 723 | WP_002014544.1 | UMP kinase | - |
| EXW61_RS06930 (EXW61_07065) | frr | 1276397..1276954 (+) | 558 | WP_000531506.1 | ribosome recycling factor | - |
| EXW61_RS06935 (EXW61_07070) | - | 1277040..1277816 (+) | 777 | WP_002014545.1 | isoprenyl transferase | - |
| EXW61_RS06940 (EXW61_07075) | cdsA | 1277834..1278625 (+) | 792 | WP_002088171.1 | phosphatidate cytidylyltransferase | - |
| EXW61_RS06945 (EXW61_07080) | dxr | 1278649..1279791 (+) | 1143 | WP_002014547.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| EXW61_RS06950 (EXW61_07085) | rseP | 1279809..1281065 (+) | 1257 | WP_002088169.1 | RIP metalloprotease RseP | - |
| EXW61_RS06955 (EXW61_07090) | - | 1281175..1282875 (+) | 1701 | WP_002128803.1 | proline--tRNA ligase | - |
| EXW61_RS06960 (EXW61_07095) | - | 1283000..1287301 (+) | 4302 | WP_215599388.1 | PolC-type DNA polymerase III | - |
| EXW61_RS06965 (EXW61_07100) | rimP | 1287635..1288105 (+) | 471 | WP_002088165.1 | ribosome maturation factor RimP | - |
| EXW61_RS06970 (EXW61_07105) | nusA | 1288123..1289229 (+) | 1107 | WP_002014554.1 | transcription termination factor NusA | - |
| EXW61_RS06975 (EXW61_07110) | rnpM | 1289241..1289513 (+) | 273 | WP_002088161.1 | RNase P modulator RnpM | - |
| EXW61_RS06980 (EXW61_07115) | - | 1289514..1289825 (+) | 312 | WP_002033679.1 | YlxQ family RNA-binding protein | - |
| EXW61_RS06985 (EXW61_07120) | infB | 1289830..1291896 (+) | 2067 | WP_002014558.1 | translation initiation factor IF-2 | - |
| EXW61_RS06990 (EXW61_07125) | - | 1291893..1292174 (+) | 282 | WP_063219178.1 | DUF503 domain-containing protein | - |
| EXW61_RS06995 (EXW61_07130) | rbfA | 1292190..1292546 (+) | 357 | WP_000776437.1 | 30S ribosome-binding factor RbfA | - |
| EXW61_RS07000 (EXW61_07135) | truB | 1292637..1293560 (+) | 924 | WP_002014562.1 | tRNA pseudouridine(55) synthase TruB | - |
| EXW61_RS07005 (EXW61_07140) | ribF | 1293604..1294575 (+) | 972 | WP_002128800.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| EXW61_RS07010 (EXW61_07145) | rpsO | 1294676..1294945 (+) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| EXW61_RS07015 (EXW61_07150) | pnp | 1295107..1297260 (+) | 2154 | WP_002033682.1 | polyribonucleotide nucleotidyltransferase | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.99 Da Isoelectric Point: 4.7251
>NTDB_id=345769 EXW61_RS06910 WP_002014541.1 1272778..1273557(+) (codY) [Bacillus mycoides strain BPN37/2]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=345769 EXW61_RS06910 WP_002014541.1 1272778..1273557(+) (codY) [Bacillus mycoides strain BPN37/2]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.275 |
98.456 |
0.456 |