Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EXW27_RS23190 Genome accession   NZ_CP035999
Coordinates   4490192..4490971 (+) Length   259 a.a.
NCBI ID   WP_002014541.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN37/1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 4485192..4495971
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW27_RS23170 (EXW27_23575) trmFO 4485840..4487144 (+) 1305 WP_002066796.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EXW27_RS23175 (EXW27_23580) xerC 4487216..4488115 (+) 900 WP_078175468.1 tyrosine recombinase XerC -
  EXW27_RS23180 (EXW27_23585) hslV 4488158..4488700 (+) 543 WP_002014538.1 ATP-dependent protease proteolytic subunit HslV -
  EXW27_RS23185 (EXW27_23590) hslU 4488723..4490114 (+) 1392 WP_002014539.1 ATP-dependent protease ATPase subunit HslU -
  EXW27_RS23190 (EXW27_23595) codY 4490192..4490971 (+) 780 WP_002014541.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EXW27_RS23195 (EXW27_23600) rpsB 4491325..4492026 (+) 702 WP_002185070.1 30S ribosomal protein S2 -
  EXW27_RS23200 (EXW27_23605) tsf 4492109..4492996 (+) 888 WP_002088177.1 translation elongation factor Ts -
  EXW27_RS23205 (EXW27_23610) pyrH 4493063..4493785 (+) 723 WP_002014544.1 UMP kinase -
  EXW27_RS23210 (EXW27_23615) frr 4493789..4494346 (+) 558 WP_000531506.1 ribosome recycling factor -
  EXW27_RS23215 (EXW27_23620) - 4494432..4495208 (+) 777 WP_002014545.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.99 Da        Isoelectric Point: 4.7251

>NTDB_id=345750 EXW27_RS23190 WP_002014541.1 4490192..4490971(+) (codY) [Bacillus mycoides strain BPN37/1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=345750 EXW27_RS23190 WP_002014541.1 4490192..4490971(+) (codY) [Bacillus mycoides strain BPN37/1]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCGGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTGGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456

Multiple sequence alignment