Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   GHR20_RS27130 Genome accession   NZ_CP045740
Coordinates   6141307..6144390 (+) Length   1027 a.a.
NCBI ID   WP_153814654.1    Uniprot ID   -
Organism   Streptomyces sp. SUK 48     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6136307..6149390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  - uvrA 6141307..6144390 (+) 3084 - - Machinery gene

Sequence

Protein


Download         Length: 1027 a.a.        Molecular weight: 112223.55 Da        Isoelectric Point: 8.2302

>NTDB_id=345747 GHR20_RS27130 WP_153814654.1 6141307..6144390(+) (uvrA) [Streptomyces sp. SUK 48]
MADRLIVRGAREHNLKNVSLDLPRDSLIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSSYARQFLGQMDKPDVDFIEGL
SPAVSIDQKSTSRNPRSTVGTITEVYDYLRLLFARIGKPHCPECGRPISRQSPQAIVDKVLELPEGSRFQVLSPLVRERK
GEFVDLFSDLQTKGYSRARVDGQTIQLSEPPTLKKQEKHTIEVVVDRLTVKDSAKRRLTDSVETALGLSGGMVVLDFVDL
PEDDPERERMYSEHLYCAYDDLSFEELEPRSFSFNSPFGACPECTGIGTRMEVDPELIVPDPDKSLDEGAIHPWSHGHTK
DYFGRLIGALADALGFRTDIPFAGLPQRARKALLHGHKTQIEVRYRNRYGRERVYTTPFEGAVPFVKRRHSEAESDASRE
RFEGYMREVPCPSCEGTRLKPIVLAVSVMGKSIAEVSAMSISDCAEFLGELKLSARDKKIAERVLKEVNERLRFLVDVGL
DYLSLNRAAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLVRLRDMGNTLIVVEHDEDTIKVAD
WVVDIGPGAGEHGGKVVHSGSLKELLANTESQTGAYLSGRKAIPLPDIRRPRDPSRQLTVHGARENNLQDIDVSFPLGVF
TAVTGVSGSGKSTLVNDILYTHLARELNGARTVPGRHTRVAGDDLVDKVVHVDQSPIGRTPRSNPATYTGVFDHVRRLFA
ETTEAKVRGYQPGRFSFNVKGGRCENCAGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVHYKGKSIAEVLNMPIEEA
MHFFEAVPAISRHLRTLHDVGLGYVRLGQSATTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDISKLLTVLG
GLVDKGNTVIVIEHNLDVIKTADWLVDMGPEGGAGGGLVVAEGTPEEVAGVPASHTGKFLREVLGADRVSDAEPVKAPRA
TRKTAAAGTPAKKTVTAEANNTATKKAAAATKKTAATKTAAKKATPAKKTAAKKAAPAKKTTRASKA

Nucleotide


Download         Length: 3084 bp        

>NTDB_id=345747 GHR20_RS27130 WP_153814654.1 6141307..6144390(+) (uvrA) [Streptomyces sp. SUK 48]
GTGGCCGACCGTCTCATCGTCCGTGGCGCGCGCGAGCACAACCTGAAGAATGTCTCGCTCGACCTGCCTCGTGACTCGCT
CATCGTCTTCACGGGCCTGTCCGGGTCGGGCAAGTCCTCCCTGGCATTCGACACGATCTTCGCCGAGGGCCAGCGGCGCT
ACGTGGAGTCGCTCTCCTCGTACGCACGGCAGTTCCTCGGACAGATGGACAAGCCGGACGTCGACTTCATCGAGGGCCTG
TCCCCGGCGGTCTCCATCGACCAGAAGTCGACCTCGCGCAACCCCCGATCGACCGTCGGCACCATCACCGAGGTCTACGA
CTACCTGCGTCTGCTCTTCGCGCGCATCGGCAAGCCGCACTGCCCCGAGTGCGGCCGCCCGATCTCGCGCCAGTCGCCGC
AGGCCATCGTGGACAAGGTCCTGGAGCTGCCGGAGGGGAGCCGCTTCCAGGTGCTCTCGCCGCTGGTGCGCGAGCGCAAG
GGCGAGTTCGTCGATCTCTTCTCCGACCTCCAGACCAAGGGCTACTCCCGCGCGCGGGTGGACGGCCAGACCATCCAGCT
GTCCGAACCGCCGACCCTGAAGAAGCAGGAGAAGCACACCATCGAGGTGGTCGTGGACCGCCTCACGGTGAAGGACTCCG
CCAAGCGCCGCCTCACCGACTCCGTGGAGACCGCCCTCGGTCTGTCCGGCGGCATGGTCGTGCTCGACTTCGTGGACCTC
CCCGAGGACGACCCCGAGCGCGAGCGCATGTACTCGGAGCACCTGTACTGCGCGTACGACGACCTGTCCTTCGAGGAGCT
GGAGCCCCGCTCCTTCTCCTTCAACTCGCCCTTCGGCGCGTGCCCCGAGTGCACCGGCATCGGCACCCGCATGGAGGTCG
ACCCCGAGCTGATCGTCCCGGACCCCGACAAGTCCCTGGACGAAGGCGCCATCCACCCCTGGTCGCACGGACACACCAAG
GACTACTTCGGCCGCCTGATCGGTGCCCTCGCCGACGCGCTCGGATTCCGTACCGACATCCCCTTCGCGGGCCTGCCGCA
GCGCGCCAGGAAGGCCCTGCTGCACGGCCACAAGACCCAGATCGAGGTGCGCTACCGCAACCGGTACGGCCGCGAGCGGG
TCTACACCACGCCCTTCGAGGGCGCGGTCCCCTTCGTCAAGCGCCGGCACAGCGAGGCCGAGAGCGACGCCAGCCGCGAG
CGCTTCGAGGGCTACATGCGCGAGGTGCCCTGCCCCTCCTGCGAAGGCACCCGCCTGAAGCCGATCGTCCTCGCCGTCAG
CGTCATGGGGAAGTCGATCGCCGAGGTCTCGGCGATGTCCATCAGCGACTGCGCCGAGTTCCTGGGCGAGCTGAAGCTGA
GCGCCCGCGACAAGAAGATCGCCGAACGCGTGCTGAAGGAGGTCAACGAGCGACTGCGCTTCCTGGTCGACGTCGGCCTG
GACTACCTCTCGCTCAACCGTGCGGCCGGCACCCTCTCCGGCGGCGAGGCCCAGCGCATCCGCCTGGCCACCCAGATCGG
CTCCGGCCTGGTCGGCGTCCTGTACGTGCTGGACGAGCCCTCCATCGGCCTGCACCAGCGCGACAACCACCGGCTGATCG
AGACCCTGGTCCGGCTGCGCGACATGGGCAACACGCTCATCGTCGTGGAGCACGACGAGGACACCATCAAGGTCGCCGAC
TGGGTGGTGGACATCGGCCCCGGCGCCGGTGAGCACGGCGGCAAGGTGGTGCACAGCGGTTCCCTGAAGGAACTGCTCGC
CAACACCGAGTCGCAGACGGGCGCCTACCTCTCCGGACGCAAGGCCATCCCGCTGCCGGACATCCGGCGCCCCCGCGATC
CCTCGCGCCAACTCACCGTGCACGGCGCCCGCGAGAACAACCTCCAGGACATCGACGTGTCCTTCCCGCTGGGCGTGTTC
ACGGCCGTCACAGGCGTGTCGGGATCCGGCAAGTCCACCCTGGTCAACGACATCCTGTACACCCACCTGGCACGCGAGCT
GAACGGCGCGCGCACCGTCCCGGGCCGCCACACGCGCGTGGCCGGCGACGACCTGGTGGACAAGGTCGTCCATGTCGACC
AGTCGCCGATCGGCCGCACCCCGCGGTCCAACCCGGCGACCTACACCGGCGTCTTCGACCACGTCCGCCGCCTGTTCGCC
GAGACCACCGAGGCCAAGGTCCGCGGCTACCAGCCCGGACGCTTCTCCTTCAACGTCAAGGGCGGCCGCTGCGAGAACTG
CGCGGGCGACGGCACCATCAAGATCGAGATGAACTTCCTCCCGGACGTCTACGTCCCGTGCGAGGTCTGCCACGGCGCCC
GGTACAACCGGGAGACCCTGGAGGTCCACTACAAGGGCAAGTCCATCGCCGAGGTGCTGAACATGCCGATCGAGGAGGCC
ATGCACTTCTTCGAGGCGGTCCCGGCGATCTCGCGCCACCTGAGGACGCTGCACGACGTCGGCCTCGGCTACGTCCGCCT
CGGCCAGTCCGCCACCACGCTCTCCGGCGGCGAGGCCCAGCGCGTCAAGCTCGCCAGCGAACTCCAGAAGCGCTCCACCG
GACGCACGGTCTACGTGCTGGACGAGCCCACCACCGGTCTGCACTTCGAGGACATCAGCAAGCTGCTGACGGTGCTCGGC
GGCCTGGTCGACAAGGGCAACACGGTCATCGTCATCGAGCACAACCTCGACGTGATCAAGACCGCCGACTGGCTCGTGGA
CATGGGCCCGGAGGGCGGCGCCGGCGGTGGCCTGGTGGTCGCCGAGGGCACGCCCGAGGAGGTCGCCGGGGTCCCGGCCA
GCCACACCGGCAAGTTCCTGCGCGAGGTCCTGGGCGCCGACCGGGTCAGCGACGCGGAGCCCGTGAAGGCGCCGCGCGCC
ACCAGGAAGACGGCCGCGGCCGGGACACCGGCGAAGAAGACGGTGACGGCCGAGGCCAACAACACGGCGACCAAGAAGGC
TGCCGCGGCCACGAAGAAGACGGCCGCGACCAAGACGGCCGCGAAGAAGGCGACGCCCGCGAAGAAGACCGCCGCGAAGA
AGGCGGCACCCGCGAAGAAGACGACGCGGGCGAGCAAAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(628-864)

UvrA DNA-binding domain (UvrA_DNA-bind)

(294-403)

UvrA interaction domain (UvrA_inter)

(131-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.72

92.016

0.522
  uvrA Streptococcus pneumoniae TIGR4

56.72

92.016

0.522
  uvrA Streptococcus pneumoniae D39

56.72

92.016

0.522

Multiple sequence alignment