Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EXW27_RS20375 Genome accession   NZ_CP035999
Coordinates   3972760..3975096 (+) Length   778 a.a.
NCBI ID   WP_002184924.1    Uniprot ID   A0A7Z8RXK7
Organism   Bacillus mycoides strain BPN37/1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3967760..3980096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW27_RS20355 (EXW27_20730) cymR 3969153..3969569 (+) 417 WP_000704117.1 cysteine metabolism transcriptional regulator CymR -
  EXW27_RS20360 (EXW27_20735) - 3969605..3970750 (+) 1146 WP_002129219.1 cysteine desulfurase family protein -
  EXW27_RS20365 (EXW27_20740) mnmA 3970767..3971882 (+) 1116 WP_002088752.1 tRNA 2-thiouridine(34) synthase MnmA -
  EXW27_RS20370 (EXW27_20745) - 3971993..3972652 (+) 660 WP_002088750.1 tetratricopeptide repeat protein -
  EXW27_RS20375 (EXW27_20750) recD2 3972760..3975096 (+) 2337 WP_002184924.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EXW27_RS20380 (EXW27_20755) - 3975224..3975412 (+) 189 WP_002015288.1 hypothetical protein -
  EXW27_RS20385 (EXW27_20760) - 3975431..3975559 (+) 129 WP_002015286.1 YrzQ family protein -
  EXW27_RS20390 (EXW27_20765) - 3975596..3975808 (-) 213 WP_002015285.1 hypothetical protein -
  EXW27_RS20395 (EXW27_20770) - 3975985..3977052 (+) 1068 WP_002129216.1 AI-2E family transporter -
  EXW27_RS20400 (EXW27_20775) - 3977091..3977435 (-) 345 WP_002129215.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87164.82 Da        Isoelectric Point: 5.2043

>NTDB_id=345742 EXW27_RS20375 WP_002184924.1 3972760..3975096(+) (recD2) [Bacillus mycoides strain BPN37/1]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALSGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRAIGITGNHDDRVRAGCFYTLENIS
LQLGHVYMEKGQLVRETMSLLNNQEGGVTEEDIVGCVEMMQGEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNLNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAIPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCAGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=345742 EXW27_RS20375 WP_002184924.1 3972760..3975096(+) (recD2) [Bacillus mycoides strain BPN37/1]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAAAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCTCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGACCACCCAAAGTATGGA
AAACAATATTTAGTTGAAACGTTTAAAAAAGAATTGCCACAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCCGAAAAAATCGTGGACCATCTTGGTGAGCATGCGATTTCTAAAATTATGGATG
ATCCGGATGCGTTAAGTGGTGTTGTAAACAAGCAAAAAGCGCAGGAAATATATGAGACGATTATTGAGCATCAAGGGCTC
GAGAAAGTGATGAGTTTTTTAAATGGTTACGGTTTTGGAACAAAACTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAACTTATTGAAGAAGTGGACGGAATTGGATTTGGAAGAGCAGATGATA
TAGGGCGTGCAATCGGAATAACGGGCAATCACGACGACCGTGTACGTGCAGGGTGTTTTTATACGTTAGAGAATATTTCA
TTACAACTCGGTCACGTGTATATGGAAAAAGGTCAGCTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGCGG
AGTGACTGAGGAAGATATTGTAGGCTGCGTTGAAATGATGCAAGGTGAAGGGAAAGTCATCATAGAAGAAGAGCGTGTGT
ATTTAGCTTCGTTATTTTACTCTGAAAAAGGCGTTGTAAAGTCCATTCGCAGGCTTATGAATCAAGAGGAAACCCCTGCA
TTTCCTGAAGCAGAAGTGTTAAAGACATTAGGTGAAATTGAAGAACAGCTAAAGGTACAGTATGCACCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGTTATTAACAGGTGGACCAGGAACGGGGAAAACTACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCGCTTCACGGGCTATCACTAAATCTAAATGAATATAGTGATGACAATCCATTTCCAATA
CTATTAACGGCTCCAACAGGAAGAGCAGCGAAGCGAATGAGTGAATCGACGGGGCTTCCGGCGTGCACAATTCATCGCCT
GCTTGGATGGACGCCAGAAGGGTCTTTCCAGCGCAATGAAACAGACCCTGTTCAAGGGAAGCTCCTTATTATTGATGAGT
TTTCGATGGTAGATATTTGGCTGGCAAATCAATTGTTTAAATCCTTGCCGACGAACATCCAAGTAATCGTTGTAGGTGAT
GAAGACCAATTACCATCGGTAGGACCTGGACAAGTGTTGAAAGATTTATTAAATGCAGGTGCCATTCCAACGGTAAAACT
CACAGAAATTTATCGTCAGGCAGAAGGTTCGTCTGTTATTCAGCTTGCCCATGCGATAAAAGACGGGACGCTCCCGCCAG
ATTTAGCACAAAATAAAAAAGATCGTTCATTTATCAGCTGTGCAGGTGCTCAAATTGTTGAGGTTGTTAAAAAGGTTTGT
GAAAATGCTAAGACAAAAGGCTTTAGTGCAAGAGATGTACAAGTATTGGCACCAATGTATCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTTCAAGAAGTGTTTAATCCGAAAAAAGAAAAGAGTAAAGAAATTGCCTACGGTGACGTTGTAT
ACCGCAGAGGTGATAAAGTACTTCAATTAGTCAATCAGCCGGAAAGCCAAGTGTTTAATGGTGATATTGGAGAAATTGTT
TCAGTATTTTATGCGAAAGAAAATGTCGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAAGTAACATATAC
AAAGCCGGATTTAAATCAAATTACGCATGCCTATTGCTGCTCGATTCATAAATCGCAAGGTAGTGAATTCCCAATAGTTA
TTATGCCGATTGTAAAGAGCTACTACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGGAGTAAGAAATTC
CTTATTATTTGCGGGGAGGAAGCAGCGTTTCAATCCGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGCCGATTGCAAGAATCACAAGGAGAAGTGCAGATGGTGACGGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z8RXK7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577

Multiple sequence alignment