Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EXW60_RS05160 Genome accession   NZ_CP035987
Coordinates   998422..1000758 (-) Length   778 a.a.
NCBI ID   WP_061674813.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN29/1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 993422..1005758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW60_RS05135 (EXW60_05220) - 996082..996426 (+) 345 WP_215586868.1 PH domain-containing protein -
  EXW60_RS05140 (EXW60_05225) - 996465..997532 (-) 1068 WP_002129216.1 AI-2E family transporter -
  EXW60_RS05145 (EXW60_05230) - 997710..997922 (+) 213 WP_215586869.1 hypothetical protein -
  EXW60_RS05150 (EXW60_05235) - 997959..998087 (-) 129 WP_002015286.1 YrzQ family protein -
  EXW60_RS05155 (EXW60_05240) - 998106..998294 (-) 189 WP_002015288.1 hypothetical protein -
  EXW60_RS05160 (EXW60_05245) recD2 998422..1000758 (-) 2337 WP_061674813.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EXW60_RS05165 (EXW60_05250) - 1000866..1001525 (-) 660 WP_215586870.1 tetratricopeptide repeat protein -
  EXW60_RS05170 (EXW60_05255) mnmA 1001636..1002751 (-) 1116 WP_215586871.1 tRNA 2-thiouridine(34) synthase MnmA -
  EXW60_RS05175 (EXW60_05260) - 1002768..1003913 (-) 1146 WP_002143221.1 cysteine desulfurase family protein -
  EXW60_RS05180 (EXW60_05265) cymR 1003949..1004365 (-) 417 WP_000704117.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87291.93 Da        Isoelectric Point: 5.2670

>NTDB_id=345554 EXW60_RS05160 WP_061674813.1 998422..1000758(-) (recD2) [Bacillus mycoides strain BPN29/1]
MGNQHAMDLFEEEKRFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALSGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRAIGITGNHDDRVRAGCFYTLENIS
LQLGHVYMEKGQLVRETMSLLNNQEGRVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGVSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAIPTVKLTEIYRQAEGSSVIQLAHAIKDGTLPPDLAQNKKDRSFISCAGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKKEKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYYRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=345554 EXW60_RS05160 WP_061674813.1 998422..1000758(-) (recD2) [Bacillus mycoides strain BPN29/1]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAAAAAAGATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGACCACCCAAAGTATGGA
AAACAATATTTAGTTGAAACGTTTAAAAAAGAACTGCCACAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCCGAAAAAATCGTGGACCATCTTGGTGAGCATGCGATTTCTAAAATTATGGATG
ATCCGGATGCGTTAAGTGGTGTTGTAAACAAGCAAAAAGCGCAGGAAATATATGAGACGATTATTGAGCATCAAGGGCTC
GAGAAAGTGATGAGTTTTTTAAATGGTTACGGTTTTGGAACAAAACTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAACTTATTGAAGAAGTGGACGGAATTGGATTTGGAAGAGCAGATGATA
TAGGGCGTGCAATCGGAATAACGGGCAATCACGACGACCGTGTACGTGCAGGGTGTTTTTATACGTTAGAGAATATTTCA
TTACAACTCGGTCACGTGTATATGGAAAAAGGTCAGCTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGCAG
AGTGACTGAGGAAGATATTGTAGGCTGCGTTGAAATGATGCAAAGCGAAGGGAAAGTCATTATAGAAGAAGAGCGAGTGT
ATTTAGCTTCTTTATTCTATTCTGAGAAAGGCGTTGTAAAGTCAATTCGTCGTCTTATGAATCAAGAAGAAACCCCTGCA
TTCCCTGAAGCAGAAGTGTTAAAAACATTAGGAGAAATTGAAGAACAGCTAAAGGTACAGTATGCGCCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGTTGTTAACAGGTGGACCAGGGACGGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGAGTATCATTAAATCCGAATGAATATAGTGATGATAATCCATTTCCAATA
TTATTAACGGCCCCAACTGGAAGAGCGGCGAAGCGCATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCATCGTCT
GCTTGGATGGACGCCAGAAGGATCTTTTCAGCGCAATGAAACAGACCCTGTACAAGGGAAGCTCCTTATTATTGATGAGT
TTTCGATGGTAGATATTTGGCTTGCAAATCAATTGTTTAAATCCTTGCCGACGAACATCCAAGTAATCGTTGTAGGTGAT
GAAGACCAATTACCATCGGTAGGACCTGGACAAGTGTTGAAAGATTTATTAAATGCAGGTGCCATTCCAACGGTAAAACT
CACAGAAATTTATCGTCAGGCAGAAGGTTCGTCTGTTATTCAGCTTGCCCATGCGATAAAAGACGGGACGCTCCCGCCAG
ATTTAGCACAAAATAAAAAAGATCGTTCATTTATCAGCTGTGCAGGTGCTCAAATTGTTGAGGTTGTTAAAAAGGTTTGT
GAAAATGCTAAGACAAAAGGCTTTAGTGCAAGAGATGTACAAGTATTGGCACCAATGTACCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTTCAAGAAGTGTTTAATCCGAAAAAAGAAAAGAGTAAAGAAATTGCCTACGGTGACGTTGTAT
ACCGGAGAGGTGATAAAGTACTTCAATTAGTCAATCAGCCGGAAAGCCAAGTGTTTAATGGTGATATTGGAGAAATTGTT
TCAGTATTTTATGCGAAAGAAAATGTCGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAAGTAACATATAC
AAAGCCGGATTTAAATCAAATTACGCATGCCTATTGCTGCTCGATTCATAAATCGCAAGGTAGTGAATTCCCAATAGTTA
TTATGCCAATTGTAAAGAGCTACTACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGGAGTAAGAAATTC
CTTATTATTTGCGGGGAGGAAGCAGCGTTTCAATCCGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGCCGATTGCAAGAATCACAAGGAGAAGTGCAGATGGTGACAGTTAATGGTGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.581

Multiple sequence alignment