Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EXW60_RS02265 Genome accession   NZ_CP035987
Coordinates   467067..467846 (-) Length   259 a.a.
NCBI ID   WP_002014541.1    Uniprot ID   -
Organism   Bacillus mycoides strain BPN29/1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 462067..472846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW60_RS02240 (EXW60_02290) - 462808..463584 (-) 777 WP_002014545.1 isoprenyl transferase -
  EXW60_RS02245 (EXW60_02295) frr 463670..464227 (-) 558 WP_000531506.1 ribosome recycling factor -
  EXW60_RS02250 (EXW60_02300) pyrH 464231..464953 (-) 723 WP_002014544.1 UMP kinase -
  EXW60_RS02255 (EXW60_02305) tsf 465020..465907 (-) 888 WP_002088177.1 translation elongation factor Ts -
  EXW60_RS02260 (EXW60_02310) rpsB 466011..466712 (-) 702 WP_002088178.1 30S ribosomal protein S2 -
  EXW60_RS02265 (EXW60_02315) codY 467067..467846 (-) 780 WP_002014541.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EXW60_RS02270 (EXW60_02320) hslU 467924..469315 (-) 1392 WP_061674413.1 ATP-dependent protease ATPase subunit HslU -
  EXW60_RS02275 (EXW60_02325) hslV 469338..469880 (-) 543 WP_002014538.1 ATP-dependent protease proteolytic subunit HslV -
  EXW60_RS02280 (EXW60_02330) xerC 469924..470823 (-) 900 WP_078175468.1 tyrosine recombinase XerC -
  EXW60_RS02285 (EXW60_02335) trmFO 470895..472199 (-) 1305 WP_215586776.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28774.99 Da        Isoelectric Point: 4.7251

>NTDB_id=345546 EXW60_RS02265 WP_002014541.1 467067..467846(-) (codY) [Bacillus mycoides strain BPN29/1]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKHMLAERQFPEEYTQSLF
NVTETSSNLGVDSDYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=345546 EXW60_RS02265 WP_002014541.1 467067..467846(-) (codY) [Bacillus mycoides strain BPN29/1]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAGAT
GTCTGACACAATGTGTGAAGTAATTGAAGCGAACGTGTTCGTTGTAAGTCGTCGCGGTAAATTATTAGGATATGCGATTC
ACCAACAAATCGAAAACGAACGTATGAAGCACATGCTTGCAGAGCGTCAATTCCCAGAAGAGTATACGCAAAGTTTATTC
AATGTTACAGAAACATCTTCAAATTTAGGTGTGGATAGTGACTACACAGCATTCCCAGTAGAAAATAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACACTAGTATTAGCTCGTCTTGGTCAAG
AGTTTTTAGACGATGATTTAATTCTTGCTGAATACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATTAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCGGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.081

100

0.811
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.275

98.456

0.456

Multiple sequence alignment