Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EXW58_RS20350 Genome accession   NZ_CP035953
Coordinates   3955273..3957609 (-) Length   778 a.a.
NCBI ID   WP_002160394.1    Uniprot ID   J8F4G1
Organism   Bacillus mycoides strain BPN03/1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3950273..3962609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EXW58_RS20325 (EXW58_20605) alaS 3950303..3952945 (-) 2643 WP_002145639.1 alanine--tRNA ligase -
  EXW58_RS20330 (EXW58_20610) - 3953318..3954385 (-) 1068 WP_002138436.1 AI-2E family transporter -
  EXW58_RS20335 (EXW58_20615) - 3954562..3954774 (+) 213 WP_002160395.1 hypothetical protein -
  EXW58_RS20340 (EXW58_20620) - 3954810..3954938 (-) 129 WP_002015286.1 YrzQ family protein -
  EXW58_RS20345 (EXW58_20625) - 3954957..3955145 (-) 189 WP_002015288.1 hypothetical protein -
  EXW58_RS20350 (EXW58_20630) recD2 3955273..3957609 (-) 2337 WP_002160394.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EXW58_RS20355 (EXW58_20635) - 3957717..3958376 (-) 660 WP_002160393.1 tetratricopeptide repeat protein -
  EXW58_RS20360 (EXW58_20640) mnmA 3958487..3959602 (-) 1116 WP_002160392.1 tRNA 2-thiouridine(34) synthase MnmA -
  EXW58_RS20365 (EXW58_20645) - 3959619..3960764 (-) 1146 WP_016106216.1 cysteine desulfurase family protein -
  EXW58_RS20370 (EXW58_20650) - 3960800..3961216 (-) 417 WP_000704117.1 Rrf2 family transcriptional regulator -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87152.76 Da        Isoelectric Point: 5.3335

>NTDB_id=345281 EXW58_RS20350 WP_002160394.1 3955273..3957609(-) (recD2) [Bacillus mycoides strain BPN03/1]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYLVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPDALSGVVNKQKAQEIYETIIEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYKLIEEVDGIGFGRADDIGRAIGITGNHDDRVRAGCFYTLENIS
LQLGHVYMEKGQLVRETMSLLNNQEGRVTEEDIVGCVEMMQSEGKVIIEEERVYLASLFYSEKGVVKSIRRLMNQEETPA
FPEAEVLKTLGEIEEQLKVQYAPLQQEAVQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGVSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKGGALPPDLAQNKKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLAGRLQESQGEVQLVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=345281 EXW58_RS20350 WP_002160394.1 3955273..3957609(-) (recD2) [Bacillus mycoides strain BPN03/1]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAATTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACATACGACGAAAAAAAAGTAATGA
TAAACGGTCATTTTCCCCGTATGCATGAAGATGAAGTGTTTACATTAACAGGTCATTTTAAAGACCACCCAAAGTATGGA
AAACAATATTTAGTTGAAACGTTTAAAAAAGAACTGCCACAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGCGATTT
ATTTAAAGGGATTGGAAAGCGTACAGCCGAAAAAATCGTGGACCATCTTGGTGAGCATGCGATTTCTAAAATTATGGATG
ATCCGGATGCGTTAAGTGGTGTTGTAAACAAGCAAAAAGCGCAGGAAATATATGAGACGATTATTGAGCATCAAGGGCTC
GAGAAAGTGATGAGTTTTTTAAATGGTTACGGTTTTGGAACAAAACTTTCTATTAAAATTTATCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATAAACTTATTGAAGAAGTGGACGGAATTGGATTTGGAAGAGCAGATGATA
TAGGGCGTGCAATCGGAATAACGGGCAATCACGACGACCGTGTACGTGCAGGGTGTTTTTATACGTTAGAGAATATTTCA
TTACAATTGGGTCACGTGTATATGGAAAAAGGTCAGCTTGTAAGAGAAACGATGTCACTTTTAAATAATCAAGAAGGCAG
AGTGACTGAGGAAGATATTGTAGGCTGCGTTGAAATGATGCAAAGCGAAGGGAAAGTCATTATAGAAGAAGAGCGAGTGT
ATTTAGCTTCTTTATTCTATTCTGAGAAAGGCGTTGTAAAGTCGATCCGTCGTCTTATGAATCAAGAAGAAACCCCTGCA
TTCCCTGAAGCAGAAGTGTTAAAAACATTAGGAGAAATTGAAGAACAGCTAAAGGTGCAGTATGCGCCGCTTCAGCAAGA
AGCAGTTCAAACTGCACTTCATAAGCCGATGATGCTATTAACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GGATTGTTGAAATGTATGCATCACTTCACGGAGTATCATTAAATCCGAATGAATATAGTGATGATAATCCATTTCCGATT
TTATTAACGGCTCCAACTGGAAGAGCAGCGAAGCGAATGAGTGAATCGACGGGGCTTCCGGCGTGCACAATTCATCGTCT
ACTCGGTTGGACGCCAGAAGGATCTTTCCAGCGTAATGAAACCGATCCAGTACAAGGAAAGTTACTCATTATTGATGAGT
TTTCAATGGTAGACATTTGGCTTGCAAATCAGCTGTTTAAGTCGCTTCCGACAAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTGCTAAAAGACTTATTGAATGCAGGTGCAGTTCCAACGGTCAAGCT
TACAGAAATTTATCGTCAAGCGGAAGGGTCATCTGTTATTCAGCTTGCCCATGCGATAAAAGGTGGTGCGCTTCCGCCAG
ATTTAGCACAAAATAAAAAGGATCGTTCCTTTATTTCTTGTACAGGCGCTCAAATCGTTGAAGTTGTAAAAAAAGTATGT
GAAAATGCCAAGACAAAAGGATTTAGCGCAAGAGATGTACAAGTGTTGGCGCCTATGTACCGCGGACCAGCAGGTATTAA
TGTGTTAAATGAAGCTCTCCAAGAAGTGTTTAATCCGAAAAGGGAAAAAAGTAAAGAAATTGCATACGGTGACGTTGTAT
ACCGCAGAGGAGATAAAGTACTGCAACTCGTCAATCAGCCGGAAAGCCAAGTATTTAATGGTGATATCGGAGAAATCGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGGATTGAAGTAACGTATAC
AAAGCCAGATTTAAATCAAATTACACATGCATATTGCTGCTCGATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCGATTGTAAAAAGCTATAACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGGAGTAAGAAATTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTTCAATCCGGTGTGAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TGGCCGATTGCAAGAATCACAAGGCGAAGTGCAGCTGGTGACGGTTAATGGTGAAGAAATGGATGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J8F4G1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

56.764

100

0.577

Multiple sequence alignment