Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   PMF13cell1_RS24310 Genome accession   NZ_CP035945
Coordinates   5487335..5489179 (-) Length   614 a.a.
NCBI ID   WP_130182429.1    Uniprot ID   A0A4P6M646
Organism   Blautia producta strain PMF1     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 5466911..5499061 5487335..5489179 within 0


Gene organization within MGE regions


Location: 5466911..5499061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMF13cell1_RS24220 (PMF13cell1_04855) ligA 5466911..5468866 (-) 1956 WP_130182420.1 NAD-dependent DNA ligase LigA -
  PMF13cell1_RS24225 (PMF13cell1_04856) - 5468868..5469605 (-) 738 WP_018598348.1 pseudouridine synthase -
  PMF13cell1_RS24230 (PMF13cell1_04857) - 5469835..5471463 (+) 1629 WP_165392561.1 polysaccharide deacetylase family protein -
  PMF13cell1_RS24235 (PMF13cell1_04858) - 5471514..5472434 (-) 921 WP_130182422.1 SH3 domain-containing protein -
  PMF13cell1_RS24245 (PMF13cell1_04860) - 5472700..5472894 (-) 195 WP_130182423.1 DUF5688 family protein -
  PMF13cell1_RS24250 (PMF13cell1_04861) - 5472963..5474081 (-) 1119 WP_165392470.1 reverse transcriptase domain-containing protein -
  PMF13cell1_RS24255 (PMF13cell1_04862) - 5474177..5475187 (-) 1011 WP_115622645.1 tyrosine-type recombinase/integrase -
  PMF13cell1_RS24260 (PMF13cell1_04863) - 5475168..5476151 (-) 984 WP_118635404.1 tyrosine-type recombinase/integrase -
  PMF13cell1_RS24265 (PMF13cell1_04864) - 5476144..5477379 (-) 1236 WP_115622647.1 site-specific integrase -
  PMF13cell1_RS24270 (PMF13cell1_04865) - 5477534..5478295 (-) 762 WP_130182424.1 reverse transcriptase domain-containing protein -
  PMF13cell1_RS24275 (PMF13cell1_04866) - 5478979..5479743 (-) 765 WP_205730535.1 DUF5688 family protein -
  PMF13cell1_RS24280 (PMF13cell1_04867) efp 5480276..5480833 (-) 558 WP_130182425.1 elongation factor P -
  PMF13cell1_RS24285 (PMF13cell1_04868) - 5480919..5481431 (-) 513 WP_130182426.1 YqeG family HAD IIIA-type phosphatase -
  PMF13cell1_RS24290 (PMF13cell1_04869) - 5481594..5482952 (-) 1359 WP_130182427.1 citrate/2-methylcitrate synthase -
  PMF13cell1_RS24295 (PMF13cell1_04870) - 5483150..5483503 (+) 354 WP_018598356.1 ArsR/SmtB family transcription factor -
  PMF13cell1_RS24300 (PMF13cell1_04871) - 5483574..5485781 (-) 2208 WP_130182428.1 DNA topoisomerase III -
  PMF13cell1_RS24305 (PMF13cell1_04872) aroF 5485786..5486796 (-) 1011 WP_018598358.1 3-deoxy-7-phosphoheptulonate synthase -
  PMF13cell1_RS24310 (PMF13cell1_04874) rcrQ 5487335..5489179 (-) 1845 WP_130182429.1 ABC transporter ATP-binding protein Regulator
  PMF13cell1_RS24315 (PMF13cell1_04875) - 5489172..5491337 (-) 2166 WP_029468331.1 ABC transporter ATP-binding protein -
  PMF13cell1_RS24320 (PMF13cell1_04876) - 5491356..5491790 (-) 435 WP_018598362.1 MarR family winged helix-turn-helix transcriptional regulator -
  PMF13cell1_RS24325 (PMF13cell1_04878) - 5492041..5493429 (-) 1389 WP_130182430.1 MATE family efflux transporter -
  PMF13cell1_RS24330 (PMF13cell1_04879) - 5493448..5494335 (-) 888 WP_130182431.1 DMT family transporter -
  PMF13cell1_RS24335 (PMF13cell1_04880) - 5494350..5495570 (-) 1221 WP_130182432.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  PMF13cell1_RS24340 (PMF13cell1_04881) ispH 5496390..5497241 (+) 852 WP_130182433.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PMF13cell1_RS24345 (PMF13cell1_04882) - 5497506..5498231 (-) 726 WP_130182434.1 ABC transporter ATP-binding protein -
  PMF13cell1_RS24350 (PMF13cell1_04883) - 5498228..5499061 (-) 834 WP_130182435.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68569.42 Da        Isoelectric Point: 7.0121

>NTDB_id=345208 PMF13cell1_RS24310 WP_130182429.1 5487335..5489179(-) (rcrQ) [Blautia producta strain PMF1]
MSDTARRPRGPMGGHGKGMPGEKAKDFKGAMVRLVKYMERYKFRLILMVLFAVGGTVFNIVGPKILGKATTELFNGLVSK
INGGSGINFDKIVQILLACLCLYLVSALLSFIQGFIMTGISNDVTYSLRKDISQKINRIPMKYFESRTHGEILSRITNDV
DTLQMGINQSVTQLITSCTTLIGVLVMMLSINVWMTLAALLILPISMAIISKVMKHSQKYFQAQQKYLGEVNGQVEEIYS
GHNVVKAFNKEESVISEFEKTNEKLYSSAWRSQFFSGMMMPIMQFVGNLGYVMVALLGGFMVIKSKIEVGDVQAFFQYIR
NFTQPIQQIAQVTNMLQSSAAASERVFEFLDVEEEEQTVENPADVSHVDGNVEIRHTSFGYDPNKIIIHDFSADIKAGQK
VAIVGPTGAGKTTMIKLLMRFYDVNSGEILIDGHNIKDFNRSELRELFGMVLQDTWLFHGTIMENIRYGRLDATDEEVIA
AAKAAHAHHFIMSQPGGYQMVLNEETNNISQGQKQLLTIARAILADNRLLILDEATSSVDTRTEERIQKAMDNLMKGRTS
FVIAHRLSTIRDADLILVMKDGDIIEQGTHKALLEAGGFYANLYNSQFEKAEAM

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=345208 PMF13cell1_RS24310 WP_130182429.1 5487335..5489179(-) (rcrQ) [Blautia producta strain PMF1]
ATGAGTGATACAGCGAGAAGACCGAGAGGGCCGATGGGTGGTCACGGAAAAGGAATGCCGGGCGAGAAGGCAAAAGATTT
TAAGGGTGCCATGGTGCGTCTGGTGAAATATATGGAGCGGTATAAGTTCAGGCTGATACTGATGGTCCTGTTTGCCGTAG
GCGGTACGGTATTTAATATTGTGGGGCCTAAGATTTTAGGTAAGGCTACCACTGAACTGTTTAACGGACTGGTATCCAAG
ATAAACGGCGGCAGCGGAATCAATTTTGACAAGATTGTTCAGATCCTTTTGGCATGTCTCTGTCTGTACCTGGTCAGCGC
CCTGCTGTCCTTTATCCAGGGATTTATTATGACAGGGATATCAAATGATGTCACATACAGCCTGAGAAAAGACATCTCCC
AGAAGATCAACAGAATTCCCATGAAATATTTTGAGAGCAGGACCCACGGTGAGATCCTCTCAAGGATCACCAATGATGTG
GATACCCTGCAGATGGGTATCAACCAGAGTGTAACCCAGCTCATCACGTCCTGCACCACGCTCATAGGCGTGCTTGTGAT
GATGCTGAGTATCAATGTATGGATGACACTGGCGGCACTGCTGATCCTTCCTATCTCAATGGCGATCATCAGCAAGGTCA
TGAAGCATTCACAAAAATATTTCCAGGCACAGCAGAAGTATCTGGGTGAAGTAAACGGACAGGTGGAGGAGATTTACAGC
GGACATAATGTTGTAAAGGCATTCAACAAGGAAGAGTCCGTGATCAGCGAATTTGAGAAGACCAATGAAAAGCTGTACAG
CTCTGCATGGCGCTCTCAGTTTTTCTCCGGTATGATGATGCCTATCATGCAGTTTGTGGGTAACCTGGGATATGTGATGG
TTGCTCTGTTGGGCGGATTCATGGTGATCAAGAGCAAGATCGAAGTAGGTGATGTGCAGGCGTTTTTCCAGTATATCAGA
AACTTCACACAGCCTATCCAGCAGATCGCCCAGGTGACAAATATGCTGCAGTCCTCGGCAGCGGCATCTGAGAGAGTGTT
TGAATTCCTGGATGTTGAGGAGGAAGAGCAGACAGTGGAAAACCCGGCAGATGTCAGCCATGTTGACGGCAATGTGGAAA
TCCGCCACACATCATTTGGATATGACCCCAATAAGATCATTATCCATGACTTCTCCGCAGATATAAAAGCAGGGCAGAAG
GTGGCTATTGTGGGTCCCACAGGTGCCGGCAAGACAACCATGATCAAGCTGCTGATGCGGTTTTATGATGTCAATTCCGG
AGAGATCCTGATCGATGGTCATAACATCAAGGACTTTAACAGAAGTGAGCTGCGTGAGCTGTTTGGTATGGTCCTGCAGG
ATACCTGGCTGTTCCACGGAACAATTATGGAAAATATCCGCTATGGCCGTCTGGATGCCACAGATGAAGAGGTCATTGCA
GCGGCAAAGGCAGCACATGCCCATCACTTTATCATGTCACAGCCCGGTGGTTATCAGATGGTGCTGAACGAAGAGACAAA
CAATATCTCCCAGGGACAGAAACAGCTTCTGACCATTGCCAGAGCAATTCTGGCGGATAACAGGCTGCTGATCCTGGATG
AAGCTACTTCCTCTGTGGATACAAGAACAGAAGAGCGTATCCAAAAGGCCATGGATAATCTGATGAAGGGTAGAACCAGT
TTTGTGATCGCCCACAGGCTCTCCACTATCCGGGATGCGGATCTGATCCTTGTTATGAAAGACGGAGATATTATTGAACA
GGGAACTCATAAAGCCTTGCTGGAAGCCGGCGGATTTTATGCAAACCTGTATAACAGCCAGTTTGAGAAGGCAGAGGCCA
TGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(389-537)

ABC transporter transmembrane region (ABC_membrane)

(45-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P6M646

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.195

95.44

0.489

Multiple sequence alignment