Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   GFB63_RS02300 Genome accession   NZ_CP045596
Coordinates   460522..461265 (-) Length   247 a.a.
NCBI ID   WP_084829069.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain TK-P3A     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 455522..466265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GFB63_RS02270 (GFB63_02345) - 455787..456737 (-) 951 WP_193838366.1 TIGR01212 family radical SAM protein -
  GFB63_RS02275 (GFB63_02350) sepM 456822..457898 (-) 1077 WP_171815041.1 SepM family pheromone-processing serine protease Regulator
  GFB63_RS02280 (GFB63_02355) coaD 457876..458373 (-) 498 WP_095559436.1 pantetheine-phosphate adenylyltransferase -
  GFB63_RS02285 (GFB63_02360) rsmD 458407..459006 (-) 600 Protein_464 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GFB63_RS02290 (GFB63_02365) trxB 459097..460050 (-) 954 WP_259700003.1 thioredoxin-disulfide reductase -
  GFB63_RS02295 (GFB63_02370) - 460083..460307 (-) 225 WP_084829068.1 DUF4059 family protein -
  GFB63_RS02300 (GFB63_02375) amiE 460522..461265 (-) 744 WP_084829069.1 amino acid ABC transporter ATP-binding protein Regulator
  GFB63_RS02305 (GFB63_02380) - 461265..462011 (-) 747 WP_100262472.1 amino acid ABC transporter permease -
  GFB63_RS02310 (GFB63_02385) - 462399..463229 (-) 831 WP_084829071.1 transporter substrate-binding domain-containing protein -
  GFB63_RS02315 (GFB63_02390) - 463810..464043 (-) 234 WP_065972545.1 hypothetical protein -
  GFB63_RS02320 (GFB63_02395) dinB 464336..465439 (-) 1104 WP_084829072.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27661.80 Da        Isoelectric Point: 5.7786

>NTDB_id=345189 GFB63_RS02300 WP_084829069.1 460522..461265(-) (amiE) [Streptococcus thermophilus strain TK-P3A]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFGTITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELAKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=345189 GFB63_RS02300 WP_084829069.1 460522..461265(-) (amiE) [Streptococcus thermophilus strain TK-P3A]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGGAACAATTACCAAGGAGCAAATCCTTACCCTTCGCCGT
AAGTTGGCCATGGTGTTCCAACAGTTTAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACCATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364