Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CCO2228_RS06740 Genome accession   NZ_CP035927
Coordinates   1320985..1321500 (-) Length   171 a.a.
NCBI ID   WP_002777750.1    Uniprot ID   -
Organism   Campylobacter coli strain RM2228     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1315985..1326500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCO2228_RS06725 (CCO2228_1314) - 1316094..1317914 (-) 1821 WP_002777743.1 motility associated factor glycosyltransferase family protein -
  CCO2228_RS06730 (CCO2228_1315) - 1317911..1319734 (-) 1824 WP_130790911.1 motility associated factor glycosyltransferase family protein -
  CCO2228_RS06735 (CCO2228_1316) - 1319744..1320985 (-) 1242 WP_002777748.1 DUF2920 family protein -
  CCO2228_RS06740 (CCO2228_1317) ctsG 1320985..1321500 (-) 516 WP_002777750.1 type II secretion system protein Machinery gene
  CCO2228_RS06745 (CCO2228_1318) tsaD 1321504..1322511 (-) 1008 WP_002777752.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CCO2228_RS06750 (CCO2228_1319) - 1322508..1323902 (-) 1395 WP_002777754.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CCO2228_RS06755 (CCO2228_1320) dxr 1323899..1324975 (-) 1077 WP_002777756.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CCO2228_RS06760 (CCO2228_1321) - 1324972..1325697 (-) 726 WP_002777758.1 phosphatidate cytidylyltransferase -
  CCO2228_RS06765 (CCO2228_1322) - 1325706..1326044 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18798.59 Da        Isoelectric Point: 5.7697

>NTDB_id=345090 CCO2228_RS06740 WP_002777750.1 1320985..1321500(-) (ctsG) [Campylobacter coli strain RM2228]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYALKNSHLNTMNFMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEVSKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=345090 CCO2228_RS06740 WP_002777750.1 1320985..1321500(-) (ctsG) [Campylobacter coli strain RM2228]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTTATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATCT
ATGCCTTAAAAAATAGTCATTTAAACACTATGAATTTTATGAGCAATGTAAGTGGAGTAGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGTAAGCAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

87.719

100

0.877

Multiple sequence alignment